Cluster: HRGMv2_1019_CGC9
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1019
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1019_27 | HRGMv2_1019_27_3 | 2214 | 4031 | + | GH154 |
| pfam | HRGMv2_1019_27 | HRGMv2_1019_27_4 | 4210 | 4641 | + | EIIA-man |
| TC | HRGMv2_1019_27 | HRGMv2_1019_27_5 | 4707 | 5189 | + | 4.A.6.1.16 |
| TC | HRGMv2_1019_27 | HRGMv2_1019_27_6 | 5262 | 6131 | + | 4.A.6.1.6 |
| TC | HRGMv2_1019_27 | HRGMv2_1019_27_7 | 6124 | 6999 | + | 4.A.6.1.19 |
| NULL(UNKNOWN) | HRGMv2_1019_27 | HRGMv2_1019_27_8 | 7096 | 7740 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1019_27 | HRGMv2_1019_27_9 | 7721 | 8872 | + | GH88 |
| pfam | HRGMv2_1019_27 | HRGMv2_1019_27_10 | 8866 | 9720 | + | Hydrolase_3 |
| CAZyme | HRGMv2_1019_27 | HRGMv2_1019_27_11 | 9730 | 11397 | + | CBM91 | GH43_11 |
| NULL(UNKNOWN) | HRGMv2_1019_27 | HRGMv2_1019_27_12 | 11397 | 12197 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1019_27 | HRGMv2_1019_27_13 | 12199 | 13224 | + | GH43_24 |
| CAZyme | HRGMv2_1019_27 | HRGMv2_1019_27_14 | 13252 | 14475 | + | GH28 |
| CAZyme | HRGMv2_1019_27 | HRGMv2_1019_27_15 | 14491 | 16176 | + | GH154 |
Gene ID: HRGMv2_1019_27_3
Type: CAZyme
Location: 2214 - 4031 (+)
Type: CAZyme
Location: 2214 - 4031 (+)
Gene ID: HRGMv2_1019_27_4
Type: pfam
Location: 4210 - 4641 (+)
Type: pfam
Location: 4210 - 4641 (+)
Gene ID: HRGMv2_1019_27_5
Type: TC
Location: 4707 - 5189 (+)
Type: TC
Location: 4707 - 5189 (+)
Gene ID: HRGMv2_1019_27_6
Type: TC
Location: 5262 - 6131 (+)
Type: TC
Location: 5262 - 6131 (+)
Gene ID: HRGMv2_1019_27_7
Type: TC
Location: 6124 - 6999 (+)
Type: TC
Location: 6124 - 6999 (+)
Gene ID: HRGMv2_1019_27_8
Type:
Location: 7096 - 7740 (+)
Type:
Location: 7096 - 7740 (+)
Gene ID: HRGMv2_1019_27_9
Type: CAZyme
Location: 7721 - 8872 (+)
Type: CAZyme
Location: 7721 - 8872 (+)
Gene ID: HRGMv2_1019_27_10
Type: pfam
Location: 8866 - 9720 (+)
Type: pfam
Location: 8866 - 9720 (+)
Gene ID: HRGMv2_1019_27_11
Type: CAZyme
Location: 9730 - 11397 (+)
Type: CAZyme
Location: 9730 - 11397 (+)
Gene ID: HRGMv2_1019_27_12
Type:
Location: 11397 - 12197 (+)
Type:
Location: 11397 - 12197 (+)
Gene ID: HRGMv2_1019_27_13
Type: CAZyme
Location: 12199 - 13224 (+)
Type: CAZyme
Location: 12199 - 13224 (+)
Gene ID: HRGMv2_1019_27_14
Type: CAZyme
Location: 13252 - 14475 (+)
Type: CAZyme
Location: 13252 - 14475 (+)
Gene ID: HRGMv2_1019_27_15
Type: CAZyme
Location: 14491 - 16176 (+)
Type: CAZyme
Location: 14491 - 16176 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.