Cluster: HRGMv2_1005_CGC2
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1005
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1005_1 | HRGMv2_1005_1_87 | 97274 | 98716 | + | 3.A.1.8.1 |
| TC | HRGMv2_1005_1 | HRGMv2_1005_1_88 | 98720 | 99790 | + | 3.A.1.1.3 |
| pfam | HRGMv2_1005_1 | HRGMv2_1005_1_89 | 100220 | 101503 | + | HGD-D |
| TC | HRGMv2_1005_1 | HRGMv2_1005_1_90 | 101688 | 103298 | + | 3.A.1.5.11 |
| TC | HRGMv2_1005_1 | HRGMv2_1005_1_91 | 103387 | 104340 | + | 3.A.1.5.39 |
| TC | HRGMv2_1005_1 | HRGMv2_1005_1_92 | 104340 | 105167 | + | 3.A.1.5.39 |
| TC | HRGMv2_1005_1 | HRGMv2_1005_1_93 | 105171 | 106166 | + | 3.A.1.5.37 |
| TC | HRGMv2_1005_1 | HRGMv2_1005_1_94 | 106156 | 106941 | + | 3.A.1.5.36 |
| pfam | HRGMv2_1005_1 | HRGMv2_1005_1_95 | 107018 | 108181 | + | HGD-D |
| pfam | HRGMv2_1005_1 | HRGMv2_1005_1_96 | 108337 | 109101 | + | BcrAD_BadFG |
| CAZyme | HRGMv2_1005_1 | HRGMv2_1005_1_97 | 109116 | 110345 | + | GT4 |
Gene ID: HRGMv2_1005_1_87
Type: TC
Location: 97274 - 98716 (+)
Type: TC
Location: 97274 - 98716 (+)
Gene ID: HRGMv2_1005_1_88
Type: TC
Location: 98720 - 99790 (+)
Type: TC
Location: 98720 - 99790 (+)
Gene ID: HRGMv2_1005_1_89
Type: pfam
Location: 100220 - 101503 (+)
Type: pfam
Location: 100220 - 101503 (+)
Gene ID: HRGMv2_1005_1_90
Type: TC
Location: 101688 - 103298 (+)
Type: TC
Location: 101688 - 103298 (+)
Gene ID: HRGMv2_1005_1_91
Type: TC
Location: 103387 - 104340 (+)
Type: TC
Location: 103387 - 104340 (+)
Gene ID: HRGMv2_1005_1_92
Type: TC
Location: 104340 - 105167 (+)
Type: TC
Location: 104340 - 105167 (+)
Gene ID: HRGMv2_1005_1_93
Type: TC
Location: 105171 - 106166 (+)
Type: TC
Location: 105171 - 106166 (+)
Gene ID: HRGMv2_1005_1_94
Type: TC
Location: 106156 - 106941 (+)
Type: TC
Location: 106156 - 106941 (+)
Gene ID: HRGMv2_1005_1_95
Type: pfam
Location: 107018 - 108181 (+)
Type: pfam
Location: 107018 - 108181 (+)
Gene ID: HRGMv2_1005_1_96
Type: pfam
Location: 108337 - 109101 (+)
Type: pfam
Location: 108337 - 109101 (+)
Gene ID: HRGMv2_1005_1_97
Type: CAZyme
Location: 109116 - 110345 (+)
Type: CAZyme
Location: 109116 - 110345 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1005_1_90 | vegan > omnivore | 2.98261 | 0.01416 |
| HRGMv2_1005_1_91 | vegan > omnivore | 2.35989 | 0.01416 |
| HRGMv2_1005_1_92 | vegan > omnivore | 2.56570 | 0.01416 |
| HRGMv2_1005_1_93 | vegan > omnivore | 1.04311 | 0.01416 |
| HRGMv2_1005_1_94 | vegan > omnivore | 2.54251 | 0.01416 |
| HRGMv2_1005_1_97 | vegan > omnivore | 1.34439 | 0.01416 |