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Cluster: HRGMv2_1005_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1005_54 HRGMv2_1005_54_4 1868 3244 - GH13_20
TC HRGMv2_1005_54 HRGMv2_1005_54_5 3399 4595 - 2.A.1.2.18
TC HRGMv2_1005_54 HRGMv2_1005_54_6 4721 7081 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1005_54 HRGMv2_1005_54_7 7203 7523 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1005_54 HRGMv2_1005_54_8 7571 8470 - S09.UPW
TC HRGMv2_1005_54 HRGMv2_1005_54_9 8717 9280 + 4.A.1.2.6
pfam HRGMv2_1005_54 HRGMv2_1005_54_10 9461 10864 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1005_54 HRGMv2_1005_54_11 11125 11910 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1005_54 HRGMv2_1005_54_12 12071 12622 + 3.A.1.34.1
Gene ID: HRGMv2_1005_54_4
Type: CAZyme
Location: 1868 - 3244 (-)
Gene ID: HRGMv2_1005_54_5
Type: TC
Location: 3399 - 4595 (-)
Gene ID: HRGMv2_1005_54_6
Type: TC
Location: 4721 - 7081 (-)
Gene ID: HRGMv2_1005_54_7
Type:
Location: 7203 - 7523 (-)
Gene ID: HRGMv2_1005_54_8
Type: peptidase
Location: 7571 - 8470 (-)
Gene ID: HRGMv2_1005_54_9
Type: TC
Location: 8717 - 9280 (+)
Gene ID: HRGMv2_1005_54_10
Type: pfam
Location: 9461 - 10864 (+)
Gene ID: HRGMv2_1005_54_11
Type:
Location: 11125 - 11910 (+)
Gene ID: HRGMv2_1005_54_12
Type: TC
Location: 12071 - 12622 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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