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Cluster: HRGMv2_0979_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0979_6 HRGMv2_0979_6_41 35197 36657 - 2.A.66.2.23
NULL(UNKNOWN) HRGMv2_0979_6 HRGMv2_0979_6_42 36644 37900 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0979_6 HRGMv2_0979_6_43 37920 38993 - EpsG
CAZyme HRGMv2_0979_6 HRGMv2_0979_6_44 38990 40249 - GT4
pfam HRGMv2_0979_6 HRGMv2_0979_6_45 40297 41349 - Epimerase_2
pfam HRGMv2_0979_6 HRGMv2_0979_6_46 41428 42645 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_0979_6 HRGMv2_0979_6_47 42663 43940 - GT4
TC HRGMv2_0979_6 HRGMv2_0979_6_48 43886 44530 - 9.B.18.1.3
TC HRGMv2_0979_6 HRGMv2_0979_6_49 44572 45321 - 9.B.18.1.2
Gene ID: HRGMv2_0979_6_41
Type: TC
Location: 35197 - 36657 (-)
Gene ID: HRGMv2_0979_6_42
Type:
Location: 36644 - 37900 (-)
Gene ID: HRGMv2_0979_6_43
Type: pfam
Location: 37920 - 38993 (-)
Gene ID: HRGMv2_0979_6_44
Type: CAZyme
Location: 38990 - 40249 (-)
Gene ID: HRGMv2_0979_6_45
Type: pfam
Location: 40297 - 41349 (-)
Gene ID: HRGMv2_0979_6_46
Type: pfam
Location: 41428 - 42645 (-)
Gene ID: HRGMv2_0979_6_47
Type: CAZyme
Location: 42663 - 43940 (-)
Gene ID: HRGMv2_0979_6_48
Type: TC
Location: 43886 - 44530 (-)
Gene ID: HRGMv2_0979_6_49
Type: TC
Location: 44572 - 45321 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0979_6_46 vegetarian > omnivore 2.02964 0.02242

🧭 Explore Read Mapping of CGC

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