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Cluster: HRGMv2_0977_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0977_2 HRGMv2_0977_2_2 918 1430 + 9.B.18.1.2
pfam HRGMv2_0977_2 HRGMv2_0977_2_3 1431 1679 + Bac_transf
CAZyme HRGMv2_0977_2 HRGMv2_0977_2_4 1680 2804 + GT4
CAZyme HRGMv2_0977_2 HRGMv2_0977_2_5 2801 4084 + GT4
CAZyme HRGMv2_0977_2 HRGMv2_0977_2_6 4077 5090 + GT32
CAZyme HRGMv2_0977_2 HRGMv2_0977_2_7 5172 6176 + GT2
NULL(UNKNOWN) HRGMv2_0977_2 HRGMv2_0977_2_8 6190 7419 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0977_2 HRGMv2_0977_2_9 7473 8195 + Hexapep | Hexapep_2
CAZyme HRGMv2_0977_2 HRGMv2_0977_2_10 8213 9133 + GT101
Gene ID: HRGMv2_0977_2_2
Type: TC
Location: 918 - 1430 (+)
Gene ID: HRGMv2_0977_2_3
Type: pfam
Location: 1431 - 1679 (+)
Gene ID: HRGMv2_0977_2_4
Type: CAZyme
Location: 1680 - 2804 (+)
Gene ID: HRGMv2_0977_2_5
Type: CAZyme
Location: 2801 - 4084 (+)
Gene ID: HRGMv2_0977_2_6
Type: CAZyme
Location: 4077 - 5090 (+)
Gene ID: HRGMv2_0977_2_7
Type: CAZyme
Location: 5172 - 6176 (+)
Gene ID: HRGMv2_0977_2_8
Type:
Location: 6190 - 7419 (+)
Gene ID: HRGMv2_0977_2_9
Type: pfam
Location: 7473 - 8195 (+)
Gene ID: HRGMv2_0977_2_10
Type: CAZyme
Location: 8213 - 9133 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0977_2_4 vegetarian > vegan 2.70423 0.01199
HRGMv2_0977_2_5 vegetarian > vegan 1.67287 0.01199

🧭 Explore Read Mapping of CGC

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