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Cluster: HRGMv2_0950_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0950_1 HRGMv2_0950_1_250 284414 285190 + 9.B.18.1.2
pfam HRGMv2_0950_1 HRGMv2_0950_1_251 285223 286932 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
STP HRGMv2_0950_1 HRGMv2_0950_1_252 286932 288284 + AraC_binding
CAZyme HRGMv2_0950_1 HRGMv2_0950_1_253 288296 289060 + GT26
CAZyme HRGMv2_0950_1 HRGMv2_0950_1_254 289053 290123 + GT4
pfam HRGMv2_0950_1 HRGMv2_0950_1_255 290117 290647 + Hexapep | Hexapep_2
CAZyme HRGMv2_0950_1 HRGMv2_0950_1_256 290665 291678 + GT32
NULL(UNKNOWN) HRGMv2_0950_1 HRGMv2_0950_1_257 291671 292930 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0950_1 HRGMv2_0950_1_258 292915 293931 + GT2
Gene ID: HRGMv2_0950_1_250
Type: TC
Location: 284414 - 285190 (+)
Gene ID: HRGMv2_0950_1_251
Type: pfam
Location: 285223 - 286932 (+)
Gene ID: HRGMv2_0950_1_252
Type: STP
Location: 286932 - 288284 (+)
Gene ID: HRGMv2_0950_1_253
Type: CAZyme
Location: 288296 - 289060 (+)
Gene ID: HRGMv2_0950_1_254
Type: CAZyme
Location: 289053 - 290123 (+)
Gene ID: HRGMv2_0950_1_255
Type: pfam
Location: 290117 - 290647 (+)
Gene ID: HRGMv2_0950_1_256
Type: CAZyme
Location: 290665 - 291678 (+)
Gene ID: HRGMv2_0950_1_257
Type:
Location: 291671 - 292930 (+)
Gene ID: HRGMv2_0950_1_258
Type: CAZyme
Location: 292915 - 293931 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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