Cluster: HRGMv2_0924_CGC8
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0924
- CGC Family ID: CGCFAM_00007
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0924_8 | HRGMv2_0924_8_15 | 14966 | 15727 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_0924_8 | HRGMv2_0924_8_16 | 15721 | 16479 | + | GT26 |
| pfam | HRGMv2_0924_8 | HRGMv2_0924_8_17 | 16482 | 17699 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| pfam | HRGMv2_0924_8 | HRGMv2_0924_8_18 | 17730 | 18836 | + | Epimerase_2 |
| CAZyme | HRGMv2_0924_8 | HRGMv2_0924_8_19 | 18873 | 20699 | + | PL12_3 |
| NULL(UNKNOWN) | HRGMv2_0924_8 | HRGMv2_0924_8_20 | 20713 | 22029 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0924_8 | HRGMv2_0924_8_21 | 22019 | 23053 | + | Glycos_transf_1 | Glyco_trans_1_4 |
| CAZyme | HRGMv2_0924_8 | HRGMv2_0924_8_22 | 23040 | 24206 | + | GT4 |
| CAZyme | HRGMv2_0924_8 | HRGMv2_0924_8_23 | 24203 | 25417 | + | GT4 |
| pfam | HRGMv2_0924_8 | HRGMv2_0924_8_24 | 25458 | 26621 | + | Wzy_C |
| CAZyme | HRGMv2_0924_8 | HRGMv2_0924_8_25 | 26614 | 27627 | + | GT2 |
Gene ID: HRGMv2_0924_8_15
Type: TC
Location: 14966 - 15727 (+)
Type: TC
Location: 14966 - 15727 (+)
Gene ID: HRGMv2_0924_8_16
Type: CAZyme
Location: 15721 - 16479 (+)
Type: CAZyme
Location: 15721 - 16479 (+)
Gene ID: HRGMv2_0924_8_17
Type: pfam
Location: 16482 - 17699 (+)
Type: pfam
Location: 16482 - 17699 (+)
Gene ID: HRGMv2_0924_8_18
Type: pfam
Location: 17730 - 18836 (+)
Type: pfam
Location: 17730 - 18836 (+)
Gene ID: HRGMv2_0924_8_19
Type: CAZyme
Location: 18873 - 20699 (+)
Type: CAZyme
Location: 18873 - 20699 (+)
Gene ID: HRGMv2_0924_8_20
Type:
Location: 20713 - 22029 (+)
Type:
Location: 20713 - 22029 (+)
Gene ID: HRGMv2_0924_8_21
Type: pfam
Location: 22019 - 23053 (+)
Type: pfam
Location: 22019 - 23053 (+)
Gene ID: HRGMv2_0924_8_22
Type: CAZyme
Location: 23040 - 24206 (+)
Type: CAZyme
Location: 23040 - 24206 (+)
Gene ID: HRGMv2_0924_8_23
Type: CAZyme
Location: 24203 - 25417 (+)
Type: CAZyme
Location: 24203 - 25417 (+)
Gene ID: HRGMv2_0924_8_24
Type: pfam
Location: 25458 - 26621 (+)
Type: pfam
Location: 25458 - 26621 (+)
Gene ID: HRGMv2_0924_8_25
Type: CAZyme
Location: 26614 - 27627 (+)
Type: CAZyme
Location: 26614 - 27627 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937989795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0924_8_17 | vegetarian > omnivore | 1.55149 | 0.04258 |
| HRGMv2_0924_8_17 | vegetarian > vegan | 1.18600 | 0.02517 |