dbCAN Logo

PROTEIN: HRGMv2_0924_8_20

Loading protein structure...

Protein File & Metadata
Download PDB File
Source:
HRGMv2_0924_8_20.pdb
Genome ID:
HRGMv2_0924
Protein ID:
HRGMv2_0924_8_20

Loading protein structure information...

Detailed structural information will appear here after analysis...

Protein Sequence 
MNTDKLKKIY   EAMPEVFRSA   FAAPIHHGLV   GNKVFLSQMH   ELQAAEKMSD   EQIEDLQLSK 60
LRDLCAYCYE   VSPFYRKRFD   GAGVDPENVT   FDSFSTLPLL   DKEQVLANYE   EISIPIPGEG 120
SYAAETSGSS   GRRLVVVNSN   ECFYRENAFA   MHFYGSIGYD   YKHSRFAYFG   GDGATLITTS 180
PLYQMMRCNT   KLLNESNLAE   AVRAFDSFGP   DYLRGLTSSV   SYFAQLINQT   GMKLKKNPKG 240
IFLQSENVHP   YQLRQFEQAF   GCPVRISYGS   TERTVFGEQI   GWDGDEPVYS   FNKLYGLTEI 300
IDEHVVGTGF   VNRRMPLLRY   EIDDTVQPHG   EGYTILGHRH   VPVIGKNGEH   ISTASLCDLG 360
ESASELLSFQ   FVQDEPGKLR   LDYIVSEDLT   ETQKVALLRS   LDDKFMGCVE   SELNRVDSLQ 420
LTPRGKRTLM   IQRLNVEQ 438
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs - AFDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-A0A0H3GS56-F1-model_v4 39 438 5 437 0.6505 0.7284
AF-P76085-F1-model_v4 39 438 5 436 0.6495 0.7267
AF-I1JRY6-F1-model_v4 1 435 1 561 0.528 0.6124
AF-Q9ZNS2-F1-model_v4 34 424 3 570 0.5268 0.6788
AF-A0A0R4J3L2-F1-model_v4 21 435 1 572 0.522 0.6353
AF-I1NCI9-F1-model_v4 1 435 1 572 0.5218 0.6101
AF-K7MEW7-F1-model_v4 1 435 1 572 0.5216 0.6092
AF-A0A1D6FL91-F1-model_v4 31 435 1 565 0.5211 0.6452
AF-Q6I581-F1-model_v4 31 435 1 570 0.5198 0.6446
AF-Q9SKE2-F1-model_v4 24 434 2 569 0.5165 0.6313
Download Full AFDB Results
Structural Homologs - CAZyme3D-Whole
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
AF-A0A4P2R335-F1-model_v4 GT2 21 438 279 731 0.6566 0.871
AF-A0A2L0F8F1-F1-model_v4 GT2 21 438 298 749 0.637 0.8524
A0A915XJC2 GT2 16 415 1 605 0.5489 0.7614
AF-A0A6G7YF71-F1-model_v4 GT2 23 427 278 725 0.5419 0.733
AF-A0A387B7M2-F1-model_v4 GT2 21 427 279 729 0.5408 0.731
AF-S4Y6L4-F1-model_v4 GT2 21 427 279 729 0.5354 0.7267
AF-A9FBI0-F1-model_v4 GT2 21 427 279 729 0.5344 0.7262
AF-A0A4P2QA51-F1-model_v4 GT2 21 427 279 729 0.5286 0.7263
AF-A0A0K1EPJ6-F1-model_v4 GT2 21 427 337 787 0.5241 0.7288
AF-W0V5W2-F1-model_v4 GT4 21 427 376 819 0.5207 0.7293
Download Full CAZyme3D-Whole Results
Structural Homologs - CAZyme-ID50
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
A0A915XJC2 GT2 16 415 1 605 0.5489 0.7614
A0A387B7M2 GT2 21 427 279 729 0.5408 0.731
A0A0K1EPJ6 GT2 21 427 337 787 0.5241 0.7288
A0A4P7XK67 GT4 18 425 377 821 0.52 0.7279
USX17773.1 GT4 21 427 392 835 0.5163 0.7289
A0A1Y0I9L4 GT4 19 425 404 847 0.5101 0.7238
AZD55811.1 GT2 45 431 349 672 0.4567 0.7329
Download Full CAZyme-ID50 Results
Structural Homologs - PDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
2y4o-assembly1.cif.gz_B 30 434 1 432 0.6487 0.7132
4r1l-assembly1.cif.gz_A 40 438 6 433 0.6473 0.7212
4r1m-assembly2.cif.gz_C 40 434 6 431 0.6472 0.7251
4r1m-assembly1.cif.gz_A 40 438 6 435 0.6444 0.7194
6he0-assembly1.cif.gz_A-2 33 438 11 468 0.6178 0.7084
4r1l-assembly3.cif.gz_B 39 434 2 420 0.5882 0.6498
4rvn-assembly1.cif.gz_B 39 434 3 422 0.5882 0.651
2y27-assembly1.cif.gz_A 42 434 1 423 0.5872 0.6557
4rvo-assembly1.cif.gz_B 39 434 3 426 0.5869 0.6529
2y4n-assembly1.cif.gz_B 39 434 1 422 0.5854 0.6478
Download Full PDB Results
Structural Homologs - SwissProt
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-P39860-F1-model_v4 4 426 1 449 0.669 0.7161
AF-P76085-F1-model_v4 39 438 5 436 0.6495 0.7267
AF-Q9L9C1-F1-model_v4 40 438 9 440 0.6478 0.7281
AF-O33469-F1-model_v4 40 433 10 434 0.5817 0.6568
AF-Q72K16-F1-model_v4 39 434 2 443 0.5815 0.6575
AF-E2JA32-F1-model_v4 41 432 1 393 0.5591 0.6079
AF-P18204-F1-model_v4 53 438 9 376 0.5385 0.617
AF-Q0S7V5-F1-model_v4 1 434 7 515 0.4961 0.5557
AF-Q1BBA2-F1-model_v4 1 437 2 521 0.4947 0.5534
AF-P9WQ41-F1-model_v4 1 434 1 519 0.4915 0.5541
Download Full SwissProt Results