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Cluster: HRGMv2_0911_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0911_4 HRGMv2_0911_4_35 38168 39655 + 4.A.1.1.7
TF HRGMv2_0911_4 HRGMv2_0911_4_36 39888 40619 + GntR
CAZyme HRGMv2_0911_4 HRGMv2_0911_4_37 40763 41932 + CE9
pfam HRGMv2_0911_4 HRGMv2_0911_4_38 41965 42438 + DUF386
TC HRGMv2_0911_4 HRGMv2_0911_4_39 42885 43367 + 4.A.6.1.5
sulfatase HRGMv2_0911_4 HRGMv2_0911_4_40 43693 44745 - S1_4
TF HRGMv2_0911_4 HRGMv2_0911_4_41 44952 45716 + HTH_DeoR
CAZyme HRGMv2_0911_4 HRGMv2_0911_4_42 45912 47333 - GH1
TC HRGMv2_0911_4 HRGMv2_0911_4_43 47408 49186 - 4.A.3.1.1
TF HRGMv2_0911_4 HRGMv2_0911_4_44 49462 50472 + LacI
CAZyme HRGMv2_0911_4 HRGMv2_0911_4_45 50833 52272 - GH1
TC HRGMv2_0911_4 HRGMv2_0911_4_46 52339 54114 - 4.A.3.1.1
TF HRGMv2_0911_4 HRGMv2_0911_4_47 54470 55474 + LacI
TC HRGMv2_0911_4 HRGMv2_0911_4_48 55689 56027 + 4.A.3.1.2
Gene ID: HRGMv2_0911_4_35
Type: TC
Location: 38168 - 39655 (+)
Gene ID: HRGMv2_0911_4_36
Type: TF
Location: 39888 - 40619 (+)
Gene ID: HRGMv2_0911_4_37
Type: CAZyme
Location: 40763 - 41932 (+)
Gene ID: HRGMv2_0911_4_38
Type: pfam
Location: 41965 - 42438 (+)
Gene ID: HRGMv2_0911_4_39
Type: TC
Location: 42885 - 43367 (+)
Gene ID: HRGMv2_0911_4_40
Type: sulfatase
Location: 43693 - 44745 (-)
Gene ID: HRGMv2_0911_4_41
Type: TF
Location: 44952 - 45716 (+)
Gene ID: HRGMv2_0911_4_42
Type: CAZyme
Location: 45912 - 47333 (-)
Gene ID: HRGMv2_0911_4_43
Type: TC
Location: 47408 - 49186 (-)
Gene ID: HRGMv2_0911_4_44
Type: TF
Location: 49462 - 50472 (+)
Gene ID: HRGMv2_0911_4_45
Type: CAZyme
Location: 50833 - 52272 (-)
Gene ID: HRGMv2_0911_4_46
Type: TC
Location: 52339 - 54114 (-)
Gene ID: HRGMv2_0911_4_47
Type: TF
Location: 54470 - 55474 (+)
Gene ID: HRGMv2_0911_4_48
Type: TC
Location: 55689 - 56027 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0911_4_36 vegetarian > vegan 3.26645 0.02517

🧭 Explore Read Mapping of CGC

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