Cluster: HRGMv2_0909_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0909
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0909_75 | HRGMv2_0909_75_2 | 2364 | 2690 | + | 4.A.3.2.7 |
| TC | HRGMv2_0909_75 | HRGMv2_0909_75_3 | 2737 | 3030 | + | 4.A.3.2.6 |
| TC | HRGMv2_0909_75 | HRGMv2_0909_75_4 | 3040 | 4389 | + | 4.A.3.2.6 |
| CAZyme | HRGMv2_0909_75 | HRGMv2_0909_75_5 | 4391 | 5845 | + | GH1 |
Gene ID: HRGMv2_0909_75_2
Type: TC
Location: 2364 - 2690 (+)
Type: TC
Location: 2364 - 2690 (+)
Gene ID: HRGMv2_0909_75_3
Type: TC
Location: 2737 - 3030 (+)
Type: TC
Location: 2737 - 3030 (+)
Gene ID: HRGMv2_0909_75_4
Type: TC
Location: 3040 - 4389 (+)
Type: TC
Location: 3040 - 4389 (+)
Gene ID: HRGMv2_0909_75_5
Type: CAZyme
Location: 4391 - 5845 (+)
Type: CAZyme
Location: 4391 - 5845 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937965595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0909_75_2 | vegetarian > vegan | 1.35860 | 0.04449 |
| HRGMv2_0909_75_3 | vegetarian > vegan | 2.07617 | 0.04449 |
| HRGMv2_0909_75_4 | vegetarian > vegan | 1.84781 | 0.04449 |
| HRGMv2_0909_75_5 | vegetarian > vegan | 1.99709 | 0.04449 |