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Cluster: HRGMv2_0909_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0909_19 HRGMv2_0909_19_2 601 1164 - 4.A.1.2.6
peptidase HRGMv2_0909_19 HRGMv2_0909_19_3 1409 2308 + S09.UPW
TC HRGMv2_0909_19 HRGMv2_0909_19_4 2781 5141 + 9.A.8.1.6
TC HRGMv2_0909_19 HRGMv2_0909_19_5 5456 7120 + 4.A.1.1.3
TF HRGMv2_0909_19 HRGMv2_0909_19_6 7183 7935 - HTH_6
CAZyme HRGMv2_0909_19 HRGMv2_0909_19_7 8111 9484 + GH4
NULL(UNKNOWN) HRGMv2_0909_19 HRGMv2_0909_19_8 9650 10402 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0909_19 HRGMv2_0909_19_9 10578 11774 + 2.A.1.2.18
CAZyme HRGMv2_0909_19 HRGMv2_0909_19_10 11928 13304 + GH13_20
Gene ID: HRGMv2_0909_19_2
Type: TC
Location: 601 - 1164 (-)
Gene ID: HRGMv2_0909_19_3
Type: peptidase
Location: 1409 - 2308 (+)
Gene ID: HRGMv2_0909_19_4
Type: TC
Location: 2781 - 5141 (+)
Gene ID: HRGMv2_0909_19_5
Type: TC
Location: 5456 - 7120 (+)
Gene ID: HRGMv2_0909_19_6
Type: TF
Location: 7183 - 7935 (-)
Gene ID: HRGMv2_0909_19_7
Type: CAZyme
Location: 8111 - 9484 (+)
Gene ID: HRGMv2_0909_19_8
Type:
Location: 9650 - 10402 (+)
Gene ID: HRGMv2_0909_19_9
Type: TC
Location: 10578 - 11774 (+)
Gene ID: HRGMv2_0909_19_10
Type: CAZyme
Location: 11928 - 13304 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0909_19_7 vegan > omnivore 1.37866 0.00863
HRGMv2_0909_19_8 vegan > omnivore 1.64244 0.00863

🧭 Explore Read Mapping of CGC

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