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Cluster: HRGMv2_0904_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0904_4 HRGMv2_0904_4_38 51130 52593 - 2.A.118.1.2
TF HRGMv2_0904_4 HRGMv2_0904_4_39 52791 53525 - GntR
pfam HRGMv2_0904_4 HRGMv2_0904_4_40 53780 56533 - Sigma54_activat | PRD | EIIA-man
CAZyme HRGMv2_0904_4 HRGMv2_0904_4_41 57082 58518 - GH32
pfam HRGMv2_0904_4 HRGMv2_0904_4_42 58548 58952 - EIIA-man
TC HRGMv2_0904_4 HRGMv2_0904_4_43 58986 59846 - 4.A.6.1.13
TC HRGMv2_0904_4 HRGMv2_0904_4_44 59839 60612 - 4.A.6.1.13
TC HRGMv2_0904_4 HRGMv2_0904_4_45 60628 61116 - 4.A.6.1.16
Gene ID: HRGMv2_0904_4_38
Type: TC
Location: 51130 - 52593 (-)
Gene ID: HRGMv2_0904_4_39
Type: TF
Location: 52791 - 53525 (-)
Gene ID: HRGMv2_0904_4_40
Type: pfam
Location: 53780 - 56533 (-)
Gene ID: HRGMv2_0904_4_41
Type: CAZyme
Location: 57082 - 58518 (-)
Gene ID: HRGMv2_0904_4_42
Type: pfam
Location: 58548 - 58952 (-)
Gene ID: HRGMv2_0904_4_43
Type: TC
Location: 58986 - 59846 (-)
Gene ID: HRGMv2_0904_4_44
Type: TC
Location: 59839 - 60612 (-)
Gene ID: HRGMv2_0904_4_45
Type: TC
Location: 60628 - 61116 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0904_4_39 vegan > omnivore 1.55478 0.01882
HRGMv2_0904_4_39 vegetarian > omnivore 2.34531 0.02677
HRGMv2_0904_4_45 vegetarian > omnivore 1.48033 0.04155

🧭 Explore Read Mapping of CGC

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