Cluster: HRGMv2_0904_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0904
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0904_2 | HRGMv2_0904_2_69 | 71816 | 73303 | + | 4.A.1.1.7 |
| TF | HRGMv2_0904_2 | HRGMv2_0904_2_70 | 73536 | 74267 | + | GntR |
| CAZyme | HRGMv2_0904_2 | HRGMv2_0904_2_71 | 74411 | 75580 | + | CE9 |
| pfam | HRGMv2_0904_2 | HRGMv2_0904_2_72 | 75613 | 76086 | + | DUF386 |
| CAZyme | HRGMv2_0904_2 | HRGMv2_0904_2_73 | 76572 | 78368 | + | GH35 |
| TC | HRGMv2_0904_2 | HRGMv2_0904_2_74 | 78371 | 78835 | + | 4.A.6.1.18 |
| TC | HRGMv2_0904_2 | HRGMv2_0904_2_75 | 78929 | 79816 | + | 4.A.6.1.18 |
| TC | HRGMv2_0904_2 | HRGMv2_0904_2_76 | 79806 | 80645 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | HRGMv2_0904_2 | HRGMv2_0904_2_77 | 80834 | 81457 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0904_2 | HRGMv2_0904_2_78 | 81539 | 81967 | + | 4.A.6.1.8 |
| TF | HRGMv2_0904_2 | HRGMv2_0904_2_79 | 82055 | 82789 | + | GntR |
| STP | HRGMv2_0904_2 | HRGMv2_0904_2_80 | 82901 | 84067 | + | SIS | SIS |
| CAZyme | HRGMv2_0904_2 | HRGMv2_0904_2_81 | 84185 | 85354 | + | CE9 |
Gene ID: HRGMv2_0904_2_69
Type: TC
Location: 71816 - 73303 (+)
Type: TC
Location: 71816 - 73303 (+)
Gene ID: HRGMv2_0904_2_70
Type: TF
Location: 73536 - 74267 (+)
Type: TF
Location: 73536 - 74267 (+)
Gene ID: HRGMv2_0904_2_71
Type: CAZyme
Location: 74411 - 75580 (+)
Type: CAZyme
Location: 74411 - 75580 (+)
Gene ID: HRGMv2_0904_2_72
Type: pfam
Location: 75613 - 76086 (+)
Type: pfam
Location: 75613 - 76086 (+)
Gene ID: HRGMv2_0904_2_73
Type: CAZyme
Location: 76572 - 78368 (+)
Type: CAZyme
Location: 76572 - 78368 (+)
Gene ID: HRGMv2_0904_2_74
Type: TC
Location: 78371 - 78835 (+)
Type: TC
Location: 78371 - 78835 (+)
Gene ID: HRGMv2_0904_2_75
Type: TC
Location: 78929 - 79816 (+)
Type: TC
Location: 78929 - 79816 (+)
Gene ID: HRGMv2_0904_2_76
Type: TC
Location: 79806 - 80645 (+)
Type: TC
Location: 79806 - 80645 (+)
Gene ID: HRGMv2_0904_2_77
Type:
Location: 80834 - 81457 (+)
Type:
Location: 80834 - 81457 (+)
Gene ID: HRGMv2_0904_2_78
Type: TC
Location: 81539 - 81967 (+)
Type: TC
Location: 81539 - 81967 (+)
Gene ID: HRGMv2_0904_2_79
Type: TF
Location: 82055 - 82789 (+)
Type: TF
Location: 82055 - 82789 (+)
Gene ID: HRGMv2_0904_2_80
Type: STP
Location: 82901 - 84067 (+)
Type: STP
Location: 82901 - 84067 (+)
Gene ID: HRGMv2_0904_2_81
Type: CAZyme
Location: 84185 - 85354 (+)
Type: CAZyme
Location: 84185 - 85354 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0904_2_70 | vegetarian > vegan | 3.40485 | 0.01332 |
| HRGMv2_0904_2_73 | vegetarian > vegan | 2.81661 | 0.01332 |
| HRGMv2_0904_2_74 | vegetarian > vegan | 3.44966 | 0.01332 |
| HRGMv2_0904_2_76 | vegetarian > vegan | 2.55206 | 0.01332 |