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Cluster: HRGMv2_0904_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0904_35 HRGMv2_0904_35_6 5580 7274 + 4.A.3.1.1
STP HRGMv2_0904_35 HRGMv2_0904_35_7 7437 7760 + DeoRC
pfam HRGMv2_0904_35 HRGMv2_0904_35_8 7817 9049 - Fic
CAZyme HRGMv2_0904_35 HRGMv2_0904_35_9 9418 10839 - GH1
TC HRGMv2_0904_35 HRGMv2_0904_35_10 10915 12702 - 4.A.3.1.1
TF HRGMv2_0904_35 HRGMv2_0904_35_11 12987 13988 + LacI
TC HRGMv2_0904_35 HRGMv2_0904_35_12 14167 15927 - 4.A.3.1.1
CAZyme HRGMv2_0904_35 HRGMv2_0904_35_13 16104 17546 - GH1
TF HRGMv2_0904_35 HRGMv2_0904_35_14 17836 18924 + LacI
CAZyme HRGMv2_0904_35 HRGMv2_0904_35_15 19195 20634 - GH1
TC HRGMv2_0904_35 HRGMv2_0904_35_16 20701 22467 - 4.A.3.1.1
TF HRGMv2_0904_35 HRGMv2_0904_35_17 22825 23829 + LacI
TC HRGMv2_0904_35 HRGMv2_0904_35_18 24044 24382 + 4.A.3.1.2
Gene ID: HRGMv2_0904_35_6
Type: TC
Location: 5580 - 7274 (+)
Gene ID: HRGMv2_0904_35_7
Type: STP
Location: 7437 - 7760 (+)
Gene ID: HRGMv2_0904_35_8
Type: pfam
Location: 7817 - 9049 (-)
Gene ID: HRGMv2_0904_35_9
Type: CAZyme
Location: 9418 - 10839 (-)
Gene ID: HRGMv2_0904_35_10
Type: TC
Location: 10915 - 12702 (-)
Gene ID: HRGMv2_0904_35_11
Type: TF
Location: 12987 - 13988 (+)
Gene ID: HRGMv2_0904_35_12
Type: TC
Location: 14167 - 15927 (-)
Gene ID: HRGMv2_0904_35_13
Type: CAZyme
Location: 16104 - 17546 (-)
Gene ID: HRGMv2_0904_35_14
Type: TF
Location: 17836 - 18924 (+)
Gene ID: HRGMv2_0904_35_15
Type: CAZyme
Location: 19195 - 20634 (-)
Gene ID: HRGMv2_0904_35_16
Type: TC
Location: 20701 - 22467 (-)
Gene ID: HRGMv2_0904_35_17
Type: TF
Location: 22825 - 23829 (+)
Gene ID: HRGMv2_0904_35_18
Type: TC
Location: 24044 - 24382 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0904_35_14 vegetarian > omnivore 1.01977 0.02677

🧭 Explore Read Mapping of CGC

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