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Cluster: HRGMv2_0904_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0904_30 HRGMv2_0904_30_10 8912 10417 + GH77
CAZyme HRGMv2_0904_30 HRGMv2_0904_30_11 10546 12813 + GT35
TC HRGMv2_0904_30 HRGMv2_0904_30_12 13270 14469 - 3.A.1.1.22
TC HRGMv2_0904_30 HRGMv2_0904_30_13 14538 15377 - 3.A.1.1.45
TC HRGMv2_0904_30 HRGMv2_0904_30_14 15377 16231 - 3.A.1.1.45
TC HRGMv2_0904_30 HRGMv2_0904_30_15 16319 17635 - 3.A.1.1.45
TF HRGMv2_0904_30 HRGMv2_0904_30_16 17942 18661 - GntR
TC HRGMv2_0904_30 HRGMv2_0904_30_17 18924 21341 + 4.A.1.1.8
Gene ID: HRGMv2_0904_30_10
Type: CAZyme
Location: 8912 - 10417 (+)
Gene ID: HRGMv2_0904_30_11
Type: CAZyme
Location: 10546 - 12813 (+)
Gene ID: HRGMv2_0904_30_12
Type: TC
Location: 13270 - 14469 (-)
Gene ID: HRGMv2_0904_30_13
Type: TC
Location: 14538 - 15377 (-)
Gene ID: HRGMv2_0904_30_14
Type: TC
Location: 15377 - 16231 (-)
Gene ID: HRGMv2_0904_30_15
Type: TC
Location: 16319 - 17635 (-)
Gene ID: HRGMv2_0904_30_16
Type: TF
Location: 17942 - 18661 (-)
Gene ID: HRGMv2_0904_30_17
Type: TC
Location: 18924 - 21341 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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