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Cluster: HRGMv2_0904_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0904_27 HRGMv2_0904_27_2 2333 3127 - 3.A.1.34.1
TC HRGMv2_0904_27 HRGMv2_0904_27_3 3120 4043 - 3.A.1.34.1
TC HRGMv2_0904_27 HRGMv2_0904_27_4 4248 5228 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_0904_27 HRGMv2_0904_27_5 5389 6171 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0904_27 HRGMv2_0904_27_6 6430 7833 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_0904_27 HRGMv2_0904_27_7 8015 8578 - 4.A.1.2.6
peptidase HRGMv2_0904_27 HRGMv2_0904_27_8 8823 9722 + S09.UPW
pfam HRGMv2_0904_27 HRGMv2_0904_27_9 10022 11248 - Zn_Ribbon_1
TC HRGMv2_0904_27 HRGMv2_0904_27_10 11725 14085 + 9.A.8.1.6
TC HRGMv2_0904_27 HRGMv2_0904_27_11 14206 15402 + 2.A.1.2.18
CAZyme HRGMv2_0904_27 HRGMv2_0904_27_12 15556 16932 + GH13_20
Gene ID: HRGMv2_0904_27_2
Type: TC
Location: 2333 - 3127 (-)
Gene ID: HRGMv2_0904_27_3
Type: TC
Location: 3120 - 4043 (-)
Gene ID: HRGMv2_0904_27_4
Type: TC
Location: 4248 - 5228 (-)
Gene ID: HRGMv2_0904_27_5
Type:
Location: 5389 - 6171 (-)
Gene ID: HRGMv2_0904_27_6
Type: pfam
Location: 6430 - 7833 (-)
Gene ID: HRGMv2_0904_27_7
Type: TC
Location: 8015 - 8578 (-)
Gene ID: HRGMv2_0904_27_8
Type: peptidase
Location: 8823 - 9722 (+)
Gene ID: HRGMv2_0904_27_9
Type: pfam
Location: 10022 - 11248 (-)
Gene ID: HRGMv2_0904_27_10
Type: TC
Location: 11725 - 14085 (+)
Gene ID: HRGMv2_0904_27_11
Type: TC
Location: 14206 - 15402 (+)
Gene ID: HRGMv2_0904_27_12
Type: CAZyme
Location: 15556 - 16932 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0904_27_9 vegetarian > vegan 15.86662 0.01332

🧭 Explore Read Mapping of CGC

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