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Cluster: HRGMv2_0904_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0904_18 HRGMv2_0904_18_24 26697 27464 - 3.A.1.103.1
TC HRGMv2_0904_18 HRGMv2_0904_18_25 27476 28321 - 3.A.1.103.6
CAZyme HRGMv2_0904_18 HRGMv2_0904_18_26 28468 29421 + GT2
pfam HRGMv2_0904_18 HRGMv2_0904_18_27 29428 30513 + Acyl_transf_3
CAZyme HRGMv2_0904_18 HRGMv2_0904_18_28 30634 31812 - GT2
CAZyme HRGMv2_0904_18 HRGMv2_0904_18_29 31814 32929 - GT2
pfam HRGMv2_0904_18 HRGMv2_0904_18_30 33155 34192 + Acyl_transf_3
pfam HRGMv2_0904_18 HRGMv2_0904_18_31 34226 36268 - DUF6541
CAZyme HRGMv2_0904_18 HRGMv2_0904_18_32 36815 37507 - GT2
Gene ID: HRGMv2_0904_18_24
Type: TC
Location: 26697 - 27464 (-)
Gene ID: HRGMv2_0904_18_25
Type: TC
Location: 27476 - 28321 (-)
Gene ID: HRGMv2_0904_18_26
Type: CAZyme
Location: 28468 - 29421 (+)
Gene ID: HRGMv2_0904_18_27
Type: pfam
Location: 29428 - 30513 (+)
Gene ID: HRGMv2_0904_18_28
Type: CAZyme
Location: 30634 - 31812 (-)
Gene ID: HRGMv2_0904_18_29
Type: CAZyme
Location: 31814 - 32929 (-)
Gene ID: HRGMv2_0904_18_30
Type: pfam
Location: 33155 - 34192 (+)
Gene ID: HRGMv2_0904_18_31
Type: pfam
Location: 34226 - 36268 (-)
Gene ID: HRGMv2_0904_18_32
Type: CAZyme
Location: 36815 - 37507 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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