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Cluster: HRGMv2_0903_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0903_4 HRGMv2_0903_4_217 256506 257675 - CE9
STP HRGMv2_0903_4 HRGMv2_0903_4_218 257795 258961 - SIS | SIS
TF HRGMv2_0903_4 HRGMv2_0903_4_219 259076 259807 - GntR
TC HRGMv2_0903_4 HRGMv2_0903_4_220 259993 261075 - 4.A.6.1.4
TC HRGMv2_0903_4 HRGMv2_0903_4_221 261065 261865 - 4.A.6.1.4
TC HRGMv2_0903_4 HRGMv2_0903_4_222 261956 262438 - 4.A.6.1.4
pfam HRGMv2_0903_4 HRGMv2_0903_4_223 262475 262756 - YajC
TC HRGMv2_0903_4 HRGMv2_0903_4_224 262756 263199 - 4.A.6.1.16
Gene ID: HRGMv2_0903_4_217
Type: CAZyme
Location: 256506 - 257675 (-)
Gene ID: HRGMv2_0903_4_218
Type: STP
Location: 257795 - 258961 (-)
Gene ID: HRGMv2_0903_4_219
Type: TF
Location: 259076 - 259807 (-)
Gene ID: HRGMv2_0903_4_220
Type: TC
Location: 259993 - 261075 (-)
Gene ID: HRGMv2_0903_4_221
Type: TC
Location: 261065 - 261865 (-)
Gene ID: HRGMv2_0903_4_222
Type: TC
Location: 261956 - 262438 (-)
Gene ID: HRGMv2_0903_4_223
Type: pfam
Location: 262475 - 262756 (-)
Gene ID: HRGMv2_0903_4_224
Type: TC
Location: 262756 - 263199 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0903_4_223 vegan > omnivore 1.00379 0.00701

🧭 Explore Read Mapping of CGC

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