Cluster: HRGMv2_0903_CGC11
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0903
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0903_11 | HRGMv2_0903_11_280 | 330349 | 332340 | - | GT2 |
| CAZyme | HRGMv2_0903_11 | HRGMv2_0903_11_281 | 332535 | 333671 | + | GT2 |
| TC | HRGMv2_0903_11 | HRGMv2_0903_11_282 | 333942 | 334754 | + | 3.A.1.103.4 |
| TC | HRGMv2_0903_11 | HRGMv2_0903_11_283 | 334764 | 335519 | + | 3.A.1.103.1 |
| CAZyme | HRGMv2_0903_11 | HRGMv2_0903_11_284 | 335521 | 336630 | + | GT2 |
| CAZyme | HRGMv2_0903_11 | HRGMv2_0903_11_285 | 336639 | 337697 | + | GT2 |
| CAZyme | HRGMv2_0903_11 | HRGMv2_0903_11_286 | 337719 | 338954 | + | GT4 |
| CAZyme | HRGMv2_0903_11 | HRGMv2_0903_11_287 | 339070 | 340032 | - | GT81 |
| TC | HRGMv2_0903_11 | HRGMv2_0903_11_288 | 340155 | 340523 | + | 3.A.1.103.6 |
Gene ID: HRGMv2_0903_11_280
Type: CAZyme
Location: 330349 - 332340 (-)
Type: CAZyme
Location: 330349 - 332340 (-)
Gene ID: HRGMv2_0903_11_281
Type: CAZyme
Location: 332535 - 333671 (+)
Type: CAZyme
Location: 332535 - 333671 (+)
Gene ID: HRGMv2_0903_11_282
Type: TC
Location: 333942 - 334754 (+)
Type: TC
Location: 333942 - 334754 (+)
Gene ID: HRGMv2_0903_11_283
Type: TC
Location: 334764 - 335519 (+)
Type: TC
Location: 334764 - 335519 (+)
Gene ID: HRGMv2_0903_11_284
Type: CAZyme
Location: 335521 - 336630 (+)
Type: CAZyme
Location: 335521 - 336630 (+)
Gene ID: HRGMv2_0903_11_285
Type: CAZyme
Location: 336639 - 337697 (+)
Type: CAZyme
Location: 336639 - 337697 (+)
Gene ID: HRGMv2_0903_11_286
Type: CAZyme
Location: 337719 - 338954 (+)
Type: CAZyme
Location: 337719 - 338954 (+)
Gene ID: HRGMv2_0903_11_287
Type: CAZyme
Location: 339070 - 340032 (-)
Type: CAZyme
Location: 339070 - 340032 (-)
Gene ID: HRGMv2_0903_11_288
Type: TC
Location: 340155 - 340523 (+)
Type: TC
Location: 340155 - 340523 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902494175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0903_11_281 | vegetarian > vegan | 2.26550 | 0.02151 |
| HRGMv2_0903_11_282 | vegetarian > vegan | 2.79465 | 0.02151 |
| HRGMv2_0903_11_283 | vegetarian > vegan | 1.15682 | 0.02151 |
| HRGMv2_0903_11_284 | vegetarian > omnivore | 2.26393 | 0.04463 |
| HRGMv2_0903_11_284 | vegetarian > vegan | 2.67647 | 0.02151 |
| HRGMv2_0903_11_286 | vegetarian > omnivore | 1.73266 | 0.04463 |
| HRGMv2_0903_11_286 | vegetarian > vegan | 2.64661 | 0.02151 |