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Cluster: HRGMv2_0869_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0869_27 HRGMv2_0869_27_46 58491 60899 - 9.B.144.1.5
TC HRGMv2_0869_27 HRGMv2_0869_27_47 60883 61257 - 4.D.2.1.9
CAZyme HRGMv2_0869_27 HRGMv2_0869_27_48 61242 61850 - GT2
CAZyme HRGMv2_0869_27 HRGMv2_0869_27_49 61857 62819 - GT81
pfam HRGMv2_0869_27 HRGMv2_0869_27_50 62878 64746 + DUF6020
TC HRGMv2_0869_27 HRGMv2_0869_27_51 64836 65681 + 3.A.1.103.6
TC HRGMv2_0869_27 HRGMv2_0869_27_52 65693 66460 + 3.A.1.103.1
Gene ID: HRGMv2_0869_27_46
Type: TC
Location: 58491 - 60899 (-)
Gene ID: HRGMv2_0869_27_47
Type: TC
Location: 60883 - 61257 (-)
Gene ID: HRGMv2_0869_27_48
Type: CAZyme
Location: 61242 - 61850 (-)
Gene ID: HRGMv2_0869_27_49
Type: CAZyme
Location: 61857 - 62819 (-)
Gene ID: HRGMv2_0869_27_50
Type: pfam
Location: 62878 - 64746 (+)
Gene ID: HRGMv2_0869_27_51
Type: TC
Location: 64836 - 65681 (+)
Gene ID: HRGMv2_0869_27_52
Type: TC
Location: 65693 - 66460 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0869_27_48 vegetarian > omnivore 1.20858 0.02779

🧭 Explore Read Mapping of CGC

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