Cluster: HRGMv2_0869_CGC14
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0869
- CGC Family ID: CGCFAM_00018
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0869_27 | HRGMv2_0869_27_31 | 40374 | 41396 | + | 9.B.18.2.1 |
| pfam | HRGMv2_0869_27 | HRGMv2_0869_27_32 | 41398 | 42615 | + | Epimerase | Polysacc_synt_C |
| CAZyme | HRGMv2_0869_27 | HRGMv2_0869_27_33 | 42675 | 43739 | + | GT4 |
| pfam | HRGMv2_0869_27 | HRGMv2_0869_27_34 | 43760 | 44935 | + | Epimerase_2 |
| CAZyme | HRGMv2_0869_27 | HRGMv2_0869_27_35 | 44935 | 46176 | + | GT4 |
| CAZyme | HRGMv2_0869_27 | HRGMv2_0869_27_36 | 46203 | 46913 | + | GT2 |
| pfam | HRGMv2_0869_27 | HRGMv2_0869_27_37 | 46913 | 47269 | + | DUF2304 |
| pfam | HRGMv2_0869_27 | HRGMv2_0869_27_38 | 47296 | 49479 | + | DUF7654 | DUF7657 |
| CAZyme | HRGMv2_0869_27 | HRGMv2_0869_27_39 | 49558 | 51957 | - | GT2 | GT2 |
| CAZyme | HRGMv2_0869_27 | HRGMv2_0869_27_40 | 52033 | 53226 | - | GT111 |
Gene ID: HRGMv2_0869_27_31
Type: TC
Location: 40374 - 41396 (+)
Type: TC
Location: 40374 - 41396 (+)
Gene ID: HRGMv2_0869_27_32
Type: pfam
Location: 41398 - 42615 (+)
Type: pfam
Location: 41398 - 42615 (+)
Gene ID: HRGMv2_0869_27_33
Type: CAZyme
Location: 42675 - 43739 (+)
Type: CAZyme
Location: 42675 - 43739 (+)
Gene ID: HRGMv2_0869_27_34
Type: pfam
Location: 43760 - 44935 (+)
Type: pfam
Location: 43760 - 44935 (+)
Gene ID: HRGMv2_0869_27_35
Type: CAZyme
Location: 44935 - 46176 (+)
Type: CAZyme
Location: 44935 - 46176 (+)
Gene ID: HRGMv2_0869_27_36
Type: CAZyme
Location: 46203 - 46913 (+)
Type: CAZyme
Location: 46203 - 46913 (+)
Gene ID: HRGMv2_0869_27_37
Type: pfam
Location: 46913 - 47269 (+)
Type: pfam
Location: 46913 - 47269 (+)
Gene ID: HRGMv2_0869_27_38
Type: pfam
Location: 47296 - 49479 (+)
Type: pfam
Location: 47296 - 49479 (+)
Gene ID: HRGMv2_0869_27_39
Type: CAZyme
Location: 49558 - 51957 (-)
Type: CAZyme
Location: 49558 - 51957 (-)
Gene ID: HRGMv2_0869_27_40
Type: CAZyme
Location: 52033 - 53226 (-)
Type: CAZyme
Location: 52033 - 53226 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0869_27_32 | vegetarian > omnivore | 1.44267 | 0.02779 |
| HRGMv2_0869_27_32 | vegetarian > vegan | 1.52279 | 0.03097 |
| HRGMv2_0869_27_33 | vegan > omnivore | 2.22465 | 0.01882 |
| HRGMv2_0869_27_33 | vegetarian > omnivore | 2.81188 | 0.02517 |
| HRGMv2_0869_27_35 | vegan > omnivore | 1.26196 | 0.01882 |
| HRGMv2_0869_27_35 | vegetarian > omnivore | 1.42749 | 0.02779 |
| HRGMv2_0869_27_36 | vegan > omnivore | 1.54582 | 0.01882 |
| HRGMv2_0869_27_36 | vegetarian > omnivore | 2.47044 | 0.02779 |
| HRGMv2_0869_27_37 | vegan > omnivore | 1.45118 | 0.01882 |
| HRGMv2_0869_27_37 | vegetarian > omnivore | 1.79469 | 0.02779 |
| HRGMv2_0869_27_39 | vegan > omnivore | 2.64594 | 0.01882 |
| HRGMv2_0869_27_39 | vegetarian > omnivore | 3.10980 | 0.02779 |
| HRGMv2_0869_27_40 | vegan > omnivore | 1.28287 | 0.01882 |
| HRGMv2_0869_27_40 | vegetarian > omnivore | 1.88557 | 0.02779 |