Cluster: HRGMv2_0867_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0867
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0867_4 | HRGMv2_0867_4_66 | 77193 | 77945 | - | 3.A.1.3.20 |
| TC | HRGMv2_0867_4 | HRGMv2_0867_4_67 | 77958 | 79319 | - | 3.A.1.3.16 |
| TC | HRGMv2_0867_4 | HRGMv2_0867_4_68 | 79437 | 80297 | - | 3.A.1.3.15 |
| pfam | HRGMv2_0867_4 | HRGMv2_0867_4_69 | 80445 | 81311 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_0867_4 | HRGMv2_0867_4_70 | 81458 | 82477 | - | GH109 |
Gene ID: HRGMv2_0867_4_66
Type: TC
Location: 77193 - 77945 (-)
Type: TC
Location: 77193 - 77945 (-)
Gene ID: HRGMv2_0867_4_67
Type: TC
Location: 77958 - 79319 (-)
Type: TC
Location: 77958 - 79319 (-)
Gene ID: HRGMv2_0867_4_68
Type: TC
Location: 79437 - 80297 (-)
Type: TC
Location: 79437 - 80297 (-)
Gene ID: HRGMv2_0867_4_69
Type: pfam
Location: 80445 - 81311 (-)
Type: pfam
Location: 80445 - 81311 (-)
Gene ID: HRGMv2_0867_4_70
Type: CAZyme
Location: 81458 - 82477 (-)
Type: CAZyme
Location: 81458 - 82477 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.