Cluster: HRGMv2_0867_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0867
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0867_1 | HRGMv2_0867_1_370 | 435246 | 436622 | - | GH13_20 |
| TC | HRGMv2_0867_1 | HRGMv2_0867_1_371 | 436776 | 437972 | - | 2.A.1.2.18 |
| TC | HRGMv2_0867_1 | HRGMv2_0867_1_372 | 438097 | 440457 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | HRGMv2_0867_1 | HRGMv2_0867_1_373 | 440579 | 440899 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0867_1 | HRGMv2_0867_1_374 | 441361 | 442824 | - | 2.A.3.2.3 |
Gene ID: HRGMv2_0867_1_370
Type: CAZyme
Location: 435246 - 436622 (-)
Type: CAZyme
Location: 435246 - 436622 (-)
Gene ID: HRGMv2_0867_1_371
Type: TC
Location: 436776 - 437972 (-)
Type: TC
Location: 436776 - 437972 (-)
Gene ID: HRGMv2_0867_1_372
Type: TC
Location: 438097 - 440457 (-)
Type: TC
Location: 438097 - 440457 (-)
Gene ID: HRGMv2_0867_1_373
Type:
Location: 440579 - 440899 (-)
Type:
Location: 440579 - 440899 (-)
Gene ID: HRGMv2_0867_1_374
Type: TC
Location: 441361 - 442824 (-)
Type: TC
Location: 441361 - 442824 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0867_1_374 | vegan > omnivore | 1.56946 | 0.00863 |