Cluster: HRGMv2_0867_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0867
- CGC Family ID: CGCFAM_00019
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0867_1 | HRGMv2_0867_1_223 | 268280 | 269662 | - | GH4 |
| TC | HRGMv2_0867_1 | HRGMv2_0867_1_224 | 269666 | 271282 | - | 4.A.1.1.3 |
| pfam | HRGMv2_0867_1 | HRGMv2_0867_1_225 | 271382 | 272236 | - | PRD | PRD | CAT_RBD |
| TC | HRGMv2_0867_1 | HRGMv2_0867_1_226 | 272255 | 272767 | - | 4.A.1.2.5 |
| TC | HRGMv2_0867_1 | HRGMv2_0867_1_227 | 273120 | 275363 | - | 1.I.1.1.3 |
| TC | HRGMv2_0867_1 | HRGMv2_0867_1_228 | 275924 | 278263 | + | 3.A.3.5.15 |
Gene ID: HRGMv2_0867_1_223
Type: CAZyme
Location: 268280 - 269662 (-)
Type: CAZyme
Location: 268280 - 269662 (-)
Gene ID: HRGMv2_0867_1_224
Type: TC
Location: 269666 - 271282 (-)
Type: TC
Location: 269666 - 271282 (-)
Gene ID: HRGMv2_0867_1_225
Type: pfam
Location: 271382 - 272236 (-)
Type: pfam
Location: 271382 - 272236 (-)
Gene ID: HRGMv2_0867_1_226
Type: TC
Location: 272255 - 272767 (-)
Type: TC
Location: 272255 - 272767 (-)
Gene ID: HRGMv2_0867_1_227
Type: TC
Location: 273120 - 275363 (-)
Type: TC
Location: 273120 - 275363 (-)
Gene ID: HRGMv2_0867_1_228
Type: TC
Location: 275924 - 278263 (+)
Type: TC
Location: 275924 - 278263 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.