Cluster: HRGMv2_0867_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0867
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0867_1 | HRGMv2_0867_1_68 | 73128 | 74363 | - | GT4 |
| CAZyme | HRGMv2_0867_1 | HRGMv2_0867_1_69 | 74385 | 75446 | - | GT2 |
| CAZyme | HRGMv2_0867_1 | HRGMv2_0867_1_70 | 75486 | 76742 | - | GT2 |
| TC | HRGMv2_0867_1 | HRGMv2_0867_1_71 | 76744 | 77499 | - | 3.A.1.103.1 |
| TC | HRGMv2_0867_1 | HRGMv2_0867_1_72 | 77509 | 78321 | - | 3.A.1.103.4 |
Gene ID: HRGMv2_0867_1_68
Type: CAZyme
Location: 73128 - 74363 (-)
Type: CAZyme
Location: 73128 - 74363 (-)
Gene ID: HRGMv2_0867_1_69
Type: CAZyme
Location: 74385 - 75446 (-)
Type: CAZyme
Location: 74385 - 75446 (-)
Gene ID: HRGMv2_0867_1_70
Type: CAZyme
Location: 75486 - 76742 (-)
Type: CAZyme
Location: 75486 - 76742 (-)
Gene ID: HRGMv2_0867_1_71
Type: TC
Location: 76744 - 77499 (-)
Type: TC
Location: 76744 - 77499 (-)
Gene ID: HRGMv2_0867_1_72
Type: TC
Location: 77509 - 78321 (-)
Type: TC
Location: 77509 - 78321 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0867_1_68 | vegetarian > omnivore | 1.91663 | 0.04815 |
| HRGMv2_0867_1_68 | vegetarian > vegan | 3.61187 | 0.00597 |
| HRGMv2_0867_1_69 | vegetarian > omnivore | 2.17214 | 0.04815 |
| HRGMv2_0867_1_69 | vegetarian > vegan | 5.45648 | 0.00597 |
| HRGMv2_0867_1_71 | vegetarian > vegan | 1.30413 | 0.01212 |