Cluster: HRGMv2_0867_CGC19
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0867
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0867_19 | HRGMv2_0867_19_2 | 1268 | 4027 | + | 3.A.3.4.1 |
| pfam | HRGMv2_0867_19 | HRGMv2_0867_19_3 | 4399 | 5676 | + | AAA_14 | DUF4143 |
| CAZyme | HRGMv2_0867_19 | HRGMv2_0867_19_4 | 5774 | 7204 | - | GH1 |
Gene ID: HRGMv2_0867_19_2
Type: TC
Location: 1268 - 4027 (+)
Type: TC
Location: 1268 - 4027 (+)
Gene ID: HRGMv2_0867_19_3
Type: pfam
Location: 4399 - 5676 (+)
Type: pfam
Location: 4399 - 5676 (+)
Gene ID: HRGMv2_0867_19_4
Type: CAZyme
Location: 5774 - 7204 (-)
Type: CAZyme
Location: 5774 - 7204 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0867_19_3 | vegetarian > vegan | 1.42426 | 0.00313 |