Cluster: HRGMv2_0867_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0867
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0867_15 | HRGMv2_0867_15_6 | 5530 | 6549 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0867_15 | HRGMv2_0867_15_7 | 6559 | 7965 | + | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0867_15 | HRGMv2_0867_15_8 | 8002 | 9495 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_0867_15 | HRGMv2_0867_15_9 | 9485 | 10600 | + | GT28 |
Gene ID: HRGMv2_0867_15_6
Type: TC
Location: 5530 - 6549 (+)
Type: TC
Location: 5530 - 6549 (+)
Gene ID: HRGMv2_0867_15_7
Type: pfam
Location: 6559 - 7965 (+)
Type: pfam
Location: 6559 - 7965 (+)
Gene ID: HRGMv2_0867_15_8
Type: TC
Location: 8002 - 9495 (+)
Type: TC
Location: 8002 - 9495 (+)
Gene ID: HRGMv2_0867_15_9
Type: CAZyme
Location: 9485 - 10600 (+)
Type: CAZyme
Location: 9485 - 10600 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.