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Cluster: HRGMv2_0867_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0867_14 HRGMv2_0867_14_18 17890 19059 - CE9
STP HRGMv2_0867_14 HRGMv2_0867_14_19 19179 20345 - SIS | SIS
TF HRGMv2_0867_14 HRGMv2_0867_14_20 20460 21191 - GntR
TC HRGMv2_0867_14 HRGMv2_0867_14_21 21376 22458 - 4.A.6.1.4
TC HRGMv2_0867_14 HRGMv2_0867_14_22 22448 23248 - 4.A.6.1.4
TC HRGMv2_0867_14 HRGMv2_0867_14_23 23339 23821 - 4.A.6.1.4
pfam HRGMv2_0867_14 HRGMv2_0867_14_24 23858 24139 - YajC
TC HRGMv2_0867_14 HRGMv2_0867_14_25 24139 24582 - 4.A.6.1.16
Gene ID: HRGMv2_0867_14_18
Type: CAZyme
Location: 17890 - 19059 (-)
Gene ID: HRGMv2_0867_14_19
Type: STP
Location: 19179 - 20345 (-)
Gene ID: HRGMv2_0867_14_20
Type: TF
Location: 20460 - 21191 (-)
Gene ID: HRGMv2_0867_14_21
Type: TC
Location: 21376 - 22458 (-)
Gene ID: HRGMv2_0867_14_22
Type: TC
Location: 22448 - 23248 (-)
Gene ID: HRGMv2_0867_14_23
Type: TC
Location: 23339 - 23821 (-)
Gene ID: HRGMv2_0867_14_24
Type: pfam
Location: 23858 - 24139 (-)
Gene ID: HRGMv2_0867_14_25
Type: TC
Location: 24139 - 24582 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0867_14_24 vegan > omnivore 1.03042 0.00863

🧭 Explore Read Mapping of CGC

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