Cluster: HRGMv2_0867_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0867
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0867_14 | HRGMv2_0867_14_2 | 301 | 639 | - | 4.A.3.1.2 |
| TF | HRGMv2_0867_14 | HRGMv2_0867_14_3 | 854 | 1858 | - | LacI |
| TC | HRGMv2_0867_14 | HRGMv2_0867_14_4 | 2216 | 3991 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_0867_14 | HRGMv2_0867_14_5 | 4057 | 5496 | + | GH1 |
| TF | HRGMv2_0867_14 | HRGMv2_0867_14_6 | 5686 | 6696 | - | LacI |
| TC | HRGMv2_0867_14 | HRGMv2_0867_14_7 | 6972 | 8750 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_0867_14 | HRGMv2_0867_14_8 | 8826 | 10247 | + | GH1 |
Gene ID: HRGMv2_0867_14_2
Type: TC
Location: 301 - 639 (-)
Type: TC
Location: 301 - 639 (-)
Gene ID: HRGMv2_0867_14_3
Type: TF
Location: 854 - 1858 (-)
Type: TF
Location: 854 - 1858 (-)
Gene ID: HRGMv2_0867_14_4
Type: TC
Location: 2216 - 3991 (+)
Type: TC
Location: 2216 - 3991 (+)
Gene ID: HRGMv2_0867_14_5
Type: CAZyme
Location: 4057 - 5496 (+)
Type: CAZyme
Location: 4057 - 5496 (+)
Gene ID: HRGMv2_0867_14_6
Type: TF
Location: 5686 - 6696 (-)
Type: TF
Location: 5686 - 6696 (-)
Gene ID: HRGMv2_0867_14_7
Type: TC
Location: 6972 - 8750 (+)
Type: TC
Location: 6972 - 8750 (+)
Gene ID: HRGMv2_0867_14_8
Type: CAZyme
Location: 8826 - 10247 (+)
Type: CAZyme
Location: 8826 - 10247 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.