Cluster: HRGMv2_0867_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0867
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0867_11 | HRGMv2_0867_11_5 | 5699 | 6862 | - | GT2 |
| CAZyme | HRGMv2_0867_11 | HRGMv2_0867_11_6 | 7262 | 8257 | - | GT2 |
| pfam | HRGMv2_0867_11 | HRGMv2_0867_11_7 | 8250 | 9365 | - | EpsG |
| CAZyme | HRGMv2_0867_11 | HRGMv2_0867_11_8 | 9560 | 10552 | - | GT2 |
| CAZyme | HRGMv2_0867_11 | HRGMv2_0867_11_9 | 10557 | 11390 | - | GT2 |
| TC | HRGMv2_0867_11 | HRGMv2_0867_11_10 | 11391 | 12056 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_0867_11_5
Type: CAZyme
Location: 5699 - 6862 (-)
Type: CAZyme
Location: 5699 - 6862 (-)
Gene ID: HRGMv2_0867_11_6
Type: CAZyme
Location: 7262 - 8257 (-)
Type: CAZyme
Location: 7262 - 8257 (-)
Gene ID: HRGMv2_0867_11_7
Type: pfam
Location: 8250 - 9365 (-)
Type: pfam
Location: 8250 - 9365 (-)
Gene ID: HRGMv2_0867_11_8
Type: CAZyme
Location: 9560 - 10552 (-)
Type: CAZyme
Location: 9560 - 10552 (-)
Gene ID: HRGMv2_0867_11_9
Type: CAZyme
Location: 10557 - 11390 (-)
Type: CAZyme
Location: 10557 - 11390 (-)
Gene ID: HRGMv2_0867_11_10
Type: TC
Location: 11391 - 12056 (-)
Type: TC
Location: 11391 - 12056 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0867_11_10 | vegan > omnivore | 2.13202 | 0.00863 |
| HRGMv2_0867_11_10 | vegetarian > omnivore | 1.47292 | 0.04815 |