Cluster: HRGMv2_0867_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0867
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0867_6 | HRGMv2_0867_6_32 | 33299 | 39712 | - | GH31_18 |
| TF | HRGMv2_0867_6 | HRGMv2_0867_6_33 | 40224 | 40664 | - | MarR |
| NULL(UNKNOWN) | HRGMv2_0867_6 | HRGMv2_0867_6_34 | 40769 | 41095 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0867_6 | HRGMv2_0867_6_35 | 41291 | 42118 | - | 4.A.6.1.6 |
| TC | HRGMv2_0867_6 | HRGMv2_0867_6_36 | 42118 | 42975 | - | 4.A.6.1.1 |
| TC | HRGMv2_0867_6 | HRGMv2_0867_6_37 | 43048 | 43536 | - | 4.A.6.1.9 |
Gene ID: HRGMv2_0867_6_32
Type: CAZyme
Location: 33299 - 39712 (-)
Type: CAZyme
Location: 33299 - 39712 (-)
Gene ID: HRGMv2_0867_6_33
Type: TF
Location: 40224 - 40664 (-)
Type: TF
Location: 40224 - 40664 (-)
Gene ID: HRGMv2_0867_6_34
Type:
Location: 40769 - 41095 (-)
Type:
Location: 40769 - 41095 (-)
Gene ID: HRGMv2_0867_6_35
Type: TC
Location: 41291 - 42118 (-)
Type: TC
Location: 41291 - 42118 (-)
Gene ID: HRGMv2_0867_6_36
Type: TC
Location: 42118 - 42975 (-)
Type: TC
Location: 42118 - 42975 (-)
Gene ID: HRGMv2_0867_6_37
Type: TC
Location: 43048 - 43536 (-)
Type: TC
Location: 43048 - 43536 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0867_6_32 | vegetarian > omnivore | 1.34619 | 0.04815 |
| HRGMv2_0867_6_32 | vegetarian > vegan | 2.16076 | 0.00313 |