Cluster: HRGMv2_0861_CGC15
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0861
- CGC Family ID: CGCFAM_00024
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0861_5 | HRGMv2_0861_5_149 | 169258 | 170634 | - | GH13_20 |
| TC | HRGMv2_0861_5 | HRGMv2_0861_5_150 | 170788 | 171984 | - | 2.A.1.2.18 |
| NULL(UNKNOWN) | HRGMv2_0861_5 | HRGMv2_0861_5_151 | 172160 | 172912 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0861_5 | HRGMv2_0861_5_152 | 173078 | 174451 | - | GH4 |
| TF | HRGMv2_0861_5 | HRGMv2_0861_5_153 | 174627 | 175379 | + | HTH_6 |
| TC | HRGMv2_0861_5 | HRGMv2_0861_5_154 | 175442 | 177106 | - | 4.A.1.1.3 |
| TC | HRGMv2_0861_5 | HRGMv2_0861_5_155 | 177421 | 179781 | - | 9.A.8.1.6 |
| peptidase | HRGMv2_0861_5 | HRGMv2_0861_5_156 | 180254 | 181153 | - | S09.UPW |
| TC | HRGMv2_0861_5 | HRGMv2_0861_5_157 | 181400 | 181963 | + | 4.A.1.2.6 |
| pfam | HRGMv2_0861_5 | HRGMv2_0861_5_158 | 182145 | 183548 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | HRGMv2_0861_5 | HRGMv2_0861_5_159 | 183807 | 184592 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0861_5 | HRGMv2_0861_5_160 | 184753 | 185733 | + | 3.A.1.34.1 |
| TC | HRGMv2_0861_5 | HRGMv2_0861_5_161 | 185937 | 186860 | + | 3.A.1.34.1 |
| TC | HRGMv2_0861_5 | HRGMv2_0861_5_162 | 186853 | 187647 | + | 3.A.1.34.1 |
| pfam | HRGMv2_0861_5 | HRGMv2_0861_5_163 | 187806 | 189836 | + | Metallophos | 5_nucleotid_C |
| TC | HRGMv2_0861_5 | HRGMv2_0861_5_164 | 189965 | 190732 | + | 1.A.23.4.10 |
| pfam | HRGMv2_0861_5 | HRGMv2_0861_5_165 | 190827 | 192743 | + | Bmp |
| pfam | HRGMv2_0861_5 | HRGMv2_0861_5_166 | 192740 | 193450 | + | Metallophos | Metallophos_2 |
| TC | HRGMv2_0861_5 | HRGMv2_0861_5_167 | 193576 | 194283 | - | 1.C.82.1.1 |
Gene ID: HRGMv2_0861_5_149
Type: CAZyme
Location: 169258 - 170634 (-)
Type: CAZyme
Location: 169258 - 170634 (-)
Gene ID: HRGMv2_0861_5_150
Type: TC
Location: 170788 - 171984 (-)
Type: TC
Location: 170788 - 171984 (-)
Gene ID: HRGMv2_0861_5_151
Type:
Location: 172160 - 172912 (-)
Type:
Location: 172160 - 172912 (-)
Gene ID: HRGMv2_0861_5_152
Type: CAZyme
Location: 173078 - 174451 (-)
Type: CAZyme
Location: 173078 - 174451 (-)
Gene ID: HRGMv2_0861_5_153
Type: TF
Location: 174627 - 175379 (+)
Type: TF
Location: 174627 - 175379 (+)
Gene ID: HRGMv2_0861_5_154
Type: TC
Location: 175442 - 177106 (-)
Type: TC
Location: 175442 - 177106 (-)
Gene ID: HRGMv2_0861_5_155
Type: TC
Location: 177421 - 179781 (-)
Type: TC
Location: 177421 - 179781 (-)
Gene ID: HRGMv2_0861_5_156
Type: peptidase
Location: 180254 - 181153 (-)
Type: peptidase
Location: 180254 - 181153 (-)
Gene ID: HRGMv2_0861_5_157
Type: TC
Location: 181400 - 181963 (+)
Type: TC
Location: 181400 - 181963 (+)
Gene ID: HRGMv2_0861_5_158
Type: pfam
Location: 182145 - 183548 (+)
Type: pfam
Location: 182145 - 183548 (+)
Gene ID: HRGMv2_0861_5_159
Type:
Location: 183807 - 184592 (+)
Type:
Location: 183807 - 184592 (+)
Gene ID: HRGMv2_0861_5_160
Type: TC
Location: 184753 - 185733 (+)
Type: TC
Location: 184753 - 185733 (+)
Gene ID: HRGMv2_0861_5_161
Type: TC
Location: 185937 - 186860 (+)
Type: TC
Location: 185937 - 186860 (+)
Gene ID: HRGMv2_0861_5_162
Type: TC
Location: 186853 - 187647 (+)
Type: TC
Location: 186853 - 187647 (+)
Gene ID: HRGMv2_0861_5_163
Type: pfam
Location: 187806 - 189836 (+)
Type: pfam
Location: 187806 - 189836 (+)
Gene ID: HRGMv2_0861_5_164
Type: TC
Location: 189965 - 190732 (+)
Type: TC
Location: 189965 - 190732 (+)
Gene ID: HRGMv2_0861_5_165
Type: pfam
Location: 190827 - 192743 (+)
Type: pfam
Location: 190827 - 192743 (+)
Gene ID: HRGMv2_0861_5_166
Type: pfam
Location: 192740 - 193450 (+)
Type: pfam
Location: 192740 - 193450 (+)
Gene ID: HRGMv2_0861_5_167
Type: TC
Location: 193576 - 194283 (-)
Type: TC
Location: 193576 - 194283 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958429025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0861_5_151 | vegan > omnivore | 1.67311 | 0.01415 |
| HRGMv2_0861_5_152 | vegan > omnivore | 1.35455 | 0.01415 |
| HRGMv2_0861_5_163 | vegan > omnivore | 1.81317 | 0.01415 |
| HRGMv2_0861_5_163 | vegetarian > omnivore | 1.42483 | 0.01287 |