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Cluster: HRGMv2_0830_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0830_11 HRGMv2_0830_11_7 6095 7048 + GH53
TF HRGMv2_0830_11 HRGMv2_0830_11_8 7310 8290 + LacI
TC HRGMv2_0830_11 HRGMv2_0830_11_9 8507 9964 + 4.A.1.2.8
CAZyme HRGMv2_0830_11 HRGMv2_0830_11_10 10062 11543 + GH32
TC HRGMv2_0830_11 HRGMv2_0830_11_11 12090 13286 + 2.A.1.15.13
TF HRGMv2_0830_11 HRGMv2_0830_11_12 13444 13803 - Fe_dep_repress
TF HRGMv2_0830_11 HRGMv2_0830_11_13 13822 14616 - HTH_AraC
TC HRGMv2_0830_11 HRGMv2_0830_11_14 14816 15910 + 3.A.1.14.9
TC HRGMv2_0830_11 HRGMv2_0830_11_15 15929 16702 + 3.A.1.14.7
Gene ID: HRGMv2_0830_11_7
Type: CAZyme
Location: 6095 - 7048 (+)
Gene ID: HRGMv2_0830_11_8
Type: TF
Location: 7310 - 8290 (+)
Gene ID: HRGMv2_0830_11_9
Type: TC
Location: 8507 - 9964 (+)
Gene ID: HRGMv2_0830_11_10
Type: CAZyme
Location: 10062 - 11543 (+)
Gene ID: HRGMv2_0830_11_11
Type: TC
Location: 12090 - 13286 (+)
Gene ID: HRGMv2_0830_11_12
Type: TF
Location: 13444 - 13803 (-)
Gene ID: HRGMv2_0830_11_13
Type: TF
Location: 13822 - 14616 (-)
Gene ID: HRGMv2_0830_11_14
Type: TC
Location: 14816 - 15910 (+)
Gene ID: HRGMv2_0830_11_15
Type: TC
Location: 15929 - 16702 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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