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Cluster: HRGMv2_0830_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0830_59 HRGMv2_0830_59_15 16384 18162 + CE1
CAZyme HRGMv2_0830_59 HRGMv2_0830_59_16 18390 20720 + CBM67 | GH78
TC HRGMv2_0830_59 HRGMv2_0830_59_17 20753 22069 + 4.A.3.2.2
TC HRGMv2_0830_59 HRGMv2_0830_59_18 22097 22399 + 4.A.3.2.2
TC HRGMv2_0830_59 HRGMv2_0830_59_19 22424 22738 + 4.A.3.2.2
TF HRGMv2_0830_59 HRGMv2_0830_59_20 22998 23735 + HTH_DeoR
CAZyme HRGMv2_0830_59 HRGMv2_0830_59_21 23988 25442 + GH1
TF HRGMv2_0830_59 HRGMv2_0830_59_22 25487 26680 - HTH_AraC
TC HRGMv2_0830_59 HRGMv2_0830_59_23 26856 28286 + 2.A.2.3.2
TC HRGMv2_0830_59 HRGMv2_0830_59_24 28414 29790 + 2.A.2.3.2
CAZyme HRGMv2_0830_59 HRGMv2_0830_59_25 29829 30977 + CBM67
CAZyme HRGMv2_0830_59 HRGMv2_0830_59_26 30935 32587 + GH78
CAZyme HRGMv2_0830_59 HRGMv2_0830_59_27 32553 34949 + GH3
CAZyme HRGMv2_0830_59 HRGMv2_0830_59_28 35348 36889 - GH78
TC HRGMv2_0830_59 HRGMv2_0830_59_29 36918 38267 - 2.A.2.3.3
Gene ID: HRGMv2_0830_59_15
Type: CAZyme
Location: 16384 - 18162 (+)
Gene ID: HRGMv2_0830_59_16
Type: CAZyme
Location: 18390 - 20720 (+)
Gene ID: HRGMv2_0830_59_17
Type: TC
Location: 20753 - 22069 (+)
Gene ID: HRGMv2_0830_59_18
Type: TC
Location: 22097 - 22399 (+)
Gene ID: HRGMv2_0830_59_19
Type: TC
Location: 22424 - 22738 (+)
Gene ID: HRGMv2_0830_59_20
Type: TF
Location: 22998 - 23735 (+)
Gene ID: HRGMv2_0830_59_21
Type: CAZyme
Location: 23988 - 25442 (+)
Gene ID: HRGMv2_0830_59_22
Type: TF
Location: 25487 - 26680 (-)
Gene ID: HRGMv2_0830_59_23
Type: TC
Location: 26856 - 28286 (+)
Gene ID: HRGMv2_0830_59_24
Type: TC
Location: 28414 - 29790 (+)
Gene ID: HRGMv2_0830_59_25
Type: CAZyme
Location: 29829 - 30977 (+)
Gene ID: HRGMv2_0830_59_26
Type: CAZyme
Location: 30935 - 32587 (+)
Gene ID: HRGMv2_0830_59_27
Type: CAZyme
Location: 32553 - 34949 (+)
Gene ID: HRGMv2_0830_59_28
Type: CAZyme
Location: 35348 - 36889 (-)
Gene ID: HRGMv2_0830_59_29
Type: TC
Location: 36918 - 38267 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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