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Cluster: HRGMv2_0830_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0830_59 HRGMv2_0830_59_2 727 1590 + 3.A.1.1.42
TC HRGMv2_0830_59 HRGMv2_0830_59_3 1590 2474 + 3.A.1.1.28
pfam HRGMv2_0830_59 HRGMv2_0830_59_4 2817 4583 + Transketolase_N | E1_dh | TPP_enzyme_C | Transket_pyr | Transketolase_C | DXP_synthase_N | DXP_synthase_N
TF HRGMv2_0830_59 HRGMv2_0830_59_5 4679 5374 - GntR
TC HRGMv2_0830_59 HRGMv2_0830_59_6 5527 7455 + 4.A.1.2.2
CAZyme HRGMv2_0830_59 HRGMv2_0830_59_7 7494 8933 + GH1
TC HRGMv2_0830_59 HRGMv2_0830_59_8 9054 9914 + 1.A.8.2.1
Gene ID: HRGMv2_0830_59_2
Type: TC
Location: 727 - 1590 (+)
Gene ID: HRGMv2_0830_59_3
Type: TC
Location: 1590 - 2474 (+)
Gene ID: HRGMv2_0830_59_4
Type: pfam
Location: 2817 - 4583 (+)
Gene ID: HRGMv2_0830_59_5
Type: TF
Location: 4679 - 5374 (-)
Gene ID: HRGMv2_0830_59_6
Type: TC
Location: 5527 - 7455 (+)
Gene ID: HRGMv2_0830_59_7
Type: CAZyme
Location: 7494 - 8933 (+)
Gene ID: HRGMv2_0830_59_8
Type: TC
Location: 9054 - 9914 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0830_59_6 vegan > omnivore 1.73966 0.01479
HRGMv2_0830_59_7 vegan > omnivore 2.16890 0.01479

🧭 Explore Read Mapping of CGC

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