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Cluster: HRGMv2_0830_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0830_55 HRGMv2_0830_55_2 611 2056 - 4.A.1.2.8
CAZyme HRGMv2_0830_55 HRGMv2_0830_55_3 2136 3470 - GH32
TF HRGMv2_0830_55 HRGMv2_0830_55_4 3623 4654 + LacI
CAZyme HRGMv2_0830_55 HRGMv2_0830_55_5 4712 6187 - GH32
STP HRGMv2_0830_55 HRGMv2_0830_55_6 6392 8002 - SBP_bac_1
TC HRGMv2_0830_55 HRGMv2_0830_55_7 8026 8922 - 3.A.1.1.29
TC HRGMv2_0830_55 HRGMv2_0830_55_8 8934 9926 - 3.A.1.1.10
pfam HRGMv2_0830_55 HRGMv2_0830_55_9 10447 10590 - GIIM
pfam HRGMv2_0830_55 HRGMv2_0830_55_10 10628 10930 - RVT_1
TC HRGMv2_0830_55 HRGMv2_0830_55_11 11140 11358 - 3.A.1.1.20
Gene ID: HRGMv2_0830_55_2
Type: TC
Location: 611 - 2056 (-)
Gene ID: HRGMv2_0830_55_3
Type: CAZyme
Location: 2136 - 3470 (-)
Gene ID: HRGMv2_0830_55_4
Type: TF
Location: 3623 - 4654 (+)
Gene ID: HRGMv2_0830_55_5
Type: CAZyme
Location: 4712 - 6187 (-)
Gene ID: HRGMv2_0830_55_6
Type: STP
Location: 6392 - 8002 (-)
Gene ID: HRGMv2_0830_55_7
Type: TC
Location: 8026 - 8922 (-)
Gene ID: HRGMv2_0830_55_8
Type: TC
Location: 8934 - 9926 (-)
Gene ID: HRGMv2_0830_55_9
Type: pfam
Location: 10447 - 10590 (-)
Gene ID: HRGMv2_0830_55_10
Type: pfam
Location: 10628 - 10930 (-)
Gene ID: HRGMv2_0830_55_11
Type: TC
Location: 11140 - 11358 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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