Cluster: HRGMv2_0830_CGC27
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0830
- CGC Family ID: CGCFAM_01807
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0830_42 | HRGMv2_0830_42_1 | 269 | 1732 | - | GH13_18 |
| STP | HRGMv2_0830_42 | HRGMv2_0830_42_2 | 1755 | 2711 | - | PfkB |
| CAZyme | HRGMv2_0830_42 | HRGMv2_0830_42_3 | 2907 | 5693 | + | GH3 |
| CAZyme | HRGMv2_0830_42 | HRGMv2_0830_42_4 | 6184 | 8373 | + | GH36 |
| TC | HRGMv2_0830_42 | HRGMv2_0830_42_5 | 8596 | 9954 | + | 2.A.2.3.2 |
| TF | HRGMv2_0830_42 | HRGMv2_0830_42_6 | 10019 | 10876 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_0830_42 | HRGMv2_0830_42_7 | 11099 | 11647 | + | 3.A.1.1.28 |
Gene ID: HRGMv2_0830_42_1
Type: CAZyme
Location: 269 - 1732 (-)
Type: CAZyme
Location: 269 - 1732 (-)
Gene ID: HRGMv2_0830_42_2
Type: STP
Location: 1755 - 2711 (-)
Type: STP
Location: 1755 - 2711 (-)
Gene ID: HRGMv2_0830_42_3
Type: CAZyme
Location: 2907 - 5693 (+)
Type: CAZyme
Location: 2907 - 5693 (+)
Gene ID: HRGMv2_0830_42_4
Type: CAZyme
Location: 6184 - 8373 (+)
Type: CAZyme
Location: 6184 - 8373 (+)
Gene ID: HRGMv2_0830_42_5
Type: TC
Location: 8596 - 9954 (+)
Type: TC
Location: 8596 - 9954 (+)
Gene ID: HRGMv2_0830_42_6
Type: TF
Location: 10019 - 10876 (-)
Type: TF
Location: 10019 - 10876 (-)
Gene ID: HRGMv2_0830_42_7
Type: TC
Location: 11099 - 11647 (+)
Type: TC
Location: 11099 - 11647 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium saudiense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0830_42_1 | vegan > omnivore | 2.20202 | 0.01479 |
| HRGMv2_0830_42_2 | vegan > omnivore | 1.98456 | 0.01479 |