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Cluster: HRGMv2_0830_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0830_22 HRGMv2_0830_22_9 9172 10836 + GH13_31
TC HRGMv2_0830_22 HRGMv2_0830_22_10 10912 12579 + 4.A.1.1.17
pfam HRGMv2_0830_22 HRGMv2_0830_22_11 12581 13366 + Exo_endo_phos
pfam HRGMv2_0830_22 HRGMv2_0830_22_12 13500 13682 - SASP
TC HRGMv2_0830_22 HRGMv2_0830_22_13 13909 14499 - 2.A.87.2.3
NULL(UNKNOWN) HRGMv2_0830_22 HRGMv2_0830_22_14 14696 15034 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0830_22 HRGMv2_0830_22_15 15041 16306 + TcaA_3rd_4th
TC HRGMv2_0830_22 HRGMv2_0830_22_16 16341 17627 + 1.A.34.1.1
Gene ID: HRGMv2_0830_22_9
Type: CAZyme
Location: 9172 - 10836 (+)
Gene ID: HRGMv2_0830_22_10
Type: TC
Location: 10912 - 12579 (+)
Gene ID: HRGMv2_0830_22_11
Type: pfam
Location: 12581 - 13366 (+)
Gene ID: HRGMv2_0830_22_12
Type: pfam
Location: 13500 - 13682 (-)
Gene ID: HRGMv2_0830_22_13
Type: TC
Location: 13909 - 14499 (-)
Gene ID: HRGMv2_0830_22_14
Type:
Location: 14696 - 15034 (+)
Gene ID: HRGMv2_0830_22_15
Type: pfam
Location: 15041 - 16306 (+)
Gene ID: HRGMv2_0830_22_16
Type: TC
Location: 16341 - 17627 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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