Cluster: HRGMv2_0829_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0829
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0829_7 | HRGMv2_0829_7_179 | 165828 | 167255 | + | GH32 |
| pfam | HRGMv2_0829_7 | HRGMv2_0829_7_180 | 167375 | 167773 | + | GtrA_DPMS_TM |
| TC | HRGMv2_0829_7 | HRGMv2_0829_7_181 | 167889 | 169208 | + | 2.A.3.2.5 |
| TC | HRGMv2_0829_7 | HRGMv2_0829_7_182 | 169301 | 170464 | + | 2.A.86.1.8 |
Gene ID: HRGMv2_0829_7_179
Type: CAZyme
Location: 165828 - 167255 (+)
Type: CAZyme
Location: 165828 - 167255 (+)
Gene ID: HRGMv2_0829_7_180
Type: pfam
Location: 167375 - 167773 (+)
Type: pfam
Location: 167375 - 167773 (+)
Gene ID: HRGMv2_0829_7_181
Type: TC
Location: 167889 - 169208 (+)
Type: TC
Location: 167889 - 169208 (+)
Gene ID: HRGMv2_0829_7_182
Type: TC
Location: 169301 - 170464 (+)
Type: TC
Location: 169301 - 170464 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp000435835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0829_7_179 | vegan > omnivore | 4.19835 | 0.00224 |
| HRGMv2_0829_7_180 | vegan > omnivore | 17.71384 | 0.00224 |