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Cluster: HRGMv2_0825_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0825_2 HRGMv2_0825_2_148 179173 181002 - 3.A.1.135.9
TC HRGMv2_0825_2 HRGMv2_0825_2_149 181007 182734 - 3.A.1.135.9
TF HRGMv2_0825_2 HRGMv2_0825_2_150 182841 183644 + MerR
CAZyme HRGMv2_0825_2 HRGMv2_0825_2_151 183769 185397 - GH13_31
pfam HRGMv2_0825_2 HRGMv2_0825_2_152 185565 186107 - His_Phos_1
pfam HRGMv2_0825_2 HRGMv2_0825_2_153 186136 186501 - DUF956
TC HRGMv2_0825_2 HRGMv2_0825_2_154 186618 187529 - 4.A.6.1.15
TC HRGMv2_0825_2 HRGMv2_0825_2_155 187547 188353 - 4.A.6.1.6
TC HRGMv2_0825_2 HRGMv2_0825_2_156 188390 189367 - 4.A.6.1.6
TC HRGMv2_0825_2 HRGMv2_0825_2_157 189871 191937 - 2.A.27.1.1
Gene ID: HRGMv2_0825_2_148
Type: TC
Location: 179173 - 181002 (-)
Gene ID: HRGMv2_0825_2_149
Type: TC
Location: 181007 - 182734 (-)
Gene ID: HRGMv2_0825_2_150
Type: TF
Location: 182841 - 183644 (+)
Gene ID: HRGMv2_0825_2_151
Type: CAZyme
Location: 183769 - 185397 (-)
Gene ID: HRGMv2_0825_2_152
Type: pfam
Location: 185565 - 186107 (-)
Gene ID: HRGMv2_0825_2_153
Type: pfam
Location: 186136 - 186501 (-)
Gene ID: HRGMv2_0825_2_154
Type: TC
Location: 186618 - 187529 (-)
Gene ID: HRGMv2_0825_2_155
Type: TC
Location: 187547 - 188353 (-)
Gene ID: HRGMv2_0825_2_156
Type: TC
Location: 188390 - 189367 (-)
Gene ID: HRGMv2_0825_2_157
Type: TC
Location: 189871 - 191937 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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