Cluster: HRGMv2_0735_CGC34
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_00246
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_48 | HRGMv2_0735_48_1 | 108 | 539 | + | 2.A.7.21.8 |
| NULL(UNKNOWN) | HRGMv2_0735_48 | HRGMv2_0735_48_2 | 600 | 1109 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0735_48 | HRGMv2_0735_48_3 | 1244 | 1690 | - | 1.A.22.1.3 |
| NULL(UNKNOWN) | HRGMv2_0735_48 | HRGMv2_0735_48_4 | 1752 | 3455 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0735_48 | HRGMv2_0735_48_5 | 3585 | 5378 | - | SH3_3 |
| CAZyme | HRGMv2_0735_48 | HRGMv2_0735_48_6 | 6278 | 8104 | - | GH20 |
| CAZyme | HRGMv2_0735_48 | HRGMv2_0735_48_7 | 8107 | 11208 | - | GH38 |
| CAZyme | HRGMv2_0735_48 | HRGMv2_0735_48_8 | 11262 | 12248 | - | GH130_2 |
| STP | HRGMv2_0735_48 | HRGMv2_0735_48_9 | 12599 | 14017 | - | SBP_bac_1 |
| TC | HRGMv2_0735_48 | HRGMv2_0735_48_10 | 14045 | 14968 | - | 3.A.1.1.29 |
| TC | HRGMv2_0735_48 | HRGMv2_0735_48_11 | 14984 | 15964 | - | 3.A.1.1.29 |
Gene ID: HRGMv2_0735_48_1
Type: TC
Location: 108 - 539 (+)
Type: TC
Location: 108 - 539 (+)
Gene ID: HRGMv2_0735_48_2
Type:
Location: 600 - 1109 (-)
Type:
Location: 600 - 1109 (-)
Gene ID: HRGMv2_0735_48_3
Type: TC
Location: 1244 - 1690 (-)
Type: TC
Location: 1244 - 1690 (-)
Gene ID: HRGMv2_0735_48_4
Type:
Location: 1752 - 3455 (-)
Type:
Location: 1752 - 3455 (-)
Gene ID: HRGMv2_0735_48_5
Type: pfam
Location: 3585 - 5378 (-)
Type: pfam
Location: 3585 - 5378 (-)
Gene ID: HRGMv2_0735_48_6
Type: CAZyme
Location: 6278 - 8104 (-)
Type: CAZyme
Location: 6278 - 8104 (-)
Gene ID: HRGMv2_0735_48_7
Type: CAZyme
Location: 8107 - 11208 (-)
Type: CAZyme
Location: 8107 - 11208 (-)
Gene ID: HRGMv2_0735_48_8
Type: CAZyme
Location: 11262 - 12248 (-)
Type: CAZyme
Location: 11262 - 12248 (-)
Gene ID: HRGMv2_0735_48_9
Type: STP
Location: 12599 - 14017 (-)
Type: STP
Location: 12599 - 14017 (-)
Gene ID: HRGMv2_0735_48_10
Type: TC
Location: 14045 - 14968 (-)
Type: TC
Location: 14045 - 14968 (-)
Gene ID: HRGMv2_0735_48_11
Type: TC
Location: 14984 - 15964 (-)
Type: TC
Location: 14984 - 15964 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_48_1 | vegetarian > omnivore | 2.14878 | 0.00143 |
| HRGMv2_0735_48_1 | vegetarian > vegan | 1.53099 | 0.00608 |
| HRGMv2_0735_48_2 | vegetarian > omnivore | 1.74087 | 0.00143 |
| HRGMv2_0735_48_3 | vegetarian > omnivore | 1.63110 | 0.00143 |
| HRGMv2_0735_48_4 | vegetarian > omnivore | 1.58987 | 0.00143 |
| HRGMv2_0735_48_6 | vegetarian > vegan | 1.03431 | 0.00608 |
| HRGMv2_0735_48_9 | vegetarian > vegan | 1.59379 | 0.00608 |
| HRGMv2_0735_48_11 | vegetarian > vegan | 1.97145 | 0.00608 |