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Cluster: HRGMv2_0730_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0730_8 HRGMv2_0730_8_25 31335 32168 - 3.A.1.7.5
TC HRGMv2_0730_8 HRGMv2_0730_8_26 32165 34036 - 3.A.1.7.5
pfam HRGMv2_0730_8 HRGMv2_0730_8_27 34054 34938 - PBP_like | PBP_like_2 | SBP_bac_11
pfam HRGMv2_0730_8 HRGMv2_0730_8_28 35255 36589 + LPG_synthase_TM
CAZyme HRGMv2_0730_8 HRGMv2_0730_8_29 36586 37413 + GT8
CAZyme HRGMv2_0730_8 HRGMv2_0730_8_30 37437 38267 + GT8
NULL(UNKNOWN) HRGMv2_0730_8 HRGMv2_0730_8_31 38346 38768 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0730_8 HRGMv2_0730_8_32 38770 41922 - GH3
Gene ID: HRGMv2_0730_8_25
Type: TC
Location: 31335 - 32168 (-)
Gene ID: HRGMv2_0730_8_26
Type: TC
Location: 32165 - 34036 (-)
Gene ID: HRGMv2_0730_8_27
Type: pfam
Location: 34054 - 34938 (-)
Gene ID: HRGMv2_0730_8_28
Type: pfam
Location: 35255 - 36589 (+)
Gene ID: HRGMv2_0730_8_29
Type: CAZyme
Location: 36586 - 37413 (+)
Gene ID: HRGMv2_0730_8_30
Type: CAZyme
Location: 37437 - 38267 (+)
Gene ID: HRGMv2_0730_8_31
Type:
Location: 38346 - 38768 (-)
Gene ID: HRGMv2_0730_8_32
Type: CAZyme
Location: 38770 - 41922 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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