Cluster: HRGMv2_0730_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0730
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0730_4 | HRGMv2_0730_4_40 | 45330 | 46391 | + | GT2 |
| pfam | HRGMv2_0730_4 | HRGMv2_0730_4_41 | 46395 | 46592 | - | FeThRed_B |
| TC | HRGMv2_0730_4 | HRGMv2_0730_4_42 | 46650 | 47438 | - | 2.A.5.5.2 |
| pfam | HRGMv2_0730_4 | HRGMv2_0730_4_43 | 47548 | 48642 | - | RF-1 | PCRF |
| TC | HRGMv2_0730_4 | HRGMv2_0730_4_44 | 48632 | 51466 | - | 3.A.5.1.3 |
Gene ID: HRGMv2_0730_4_40
Type: CAZyme
Location: 45330 - 46391 (+)
Type: CAZyme
Location: 45330 - 46391 (+)
Gene ID: HRGMv2_0730_4_41
Type: pfam
Location: 46395 - 46592 (-)
Type: pfam
Location: 46395 - 46592 (-)
Gene ID: HRGMv2_0730_4_42
Type: TC
Location: 46650 - 47438 (-)
Type: TC
Location: 46650 - 47438 (-)
Gene ID: HRGMv2_0730_4_43
Type: pfam
Location: 47548 - 48642 (-)
Type: pfam
Location: 47548 - 48642 (-)
Gene ID: HRGMv2_0730_4_44
Type: TC
Location: 48632 - 51466 (-)
Type: TC
Location: 48632 - 51466 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium gallicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0730_4_41 | omnivore > vegan | 2.75197 | 0.04380 |
| HRGMv2_0730_4_41 | vegetarian > vegan | 2.72347 | 0.01186 |