Cluster: HRGMv2_0730_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0730
- CGC Family ID: CGCFAM_09199
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0730_48 | HRGMv2_0730_48_6 | 4704 | 6428 | + | 3.A.2.1.3 |
| TC | HRGMv2_0730_48 | HRGMv2_0730_48_7 | 6438 | 7343 | + | 3.A.2.1.5 |
| TC | HRGMv2_0730_48 | HRGMv2_0730_48_8 | 7340 | 8740 | + | 3.A.2.1.5 |
| TC | HRGMv2_0730_48 | HRGMv2_0730_48_9 | 8752 | 9186 | + | 3.A.2.1.2 |
| CAZyme | HRGMv2_0730_48 | HRGMv2_0730_48_10 | 9322 | 11301 | + | CBM48 | GH13_9 |
| CAZyme | HRGMv2_0730_48 | HRGMv2_0730_48_11 | 11301 | 12839 | + | GT5 |
Gene ID: HRGMv2_0730_48_6
Type: TC
Location: 4704 - 6428 (+)
Type: TC
Location: 4704 - 6428 (+)
Gene ID: HRGMv2_0730_48_7
Type: TC
Location: 6438 - 7343 (+)
Type: TC
Location: 6438 - 7343 (+)
Gene ID: HRGMv2_0730_48_8
Type: TC
Location: 7340 - 8740 (+)
Type: TC
Location: 7340 - 8740 (+)
Gene ID: HRGMv2_0730_48_9
Type: TC
Location: 8752 - 9186 (+)
Type: TC
Location: 8752 - 9186 (+)
Gene ID: HRGMv2_0730_48_10
Type: CAZyme
Location: 9322 - 11301 (+)
Type: CAZyme
Location: 9322 - 11301 (+)
Gene ID: HRGMv2_0730_48_11
Type: CAZyme
Location: 11301 - 12839 (+)
Type: CAZyme
Location: 11301 - 12839 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium gallicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.