Cluster: HRGMv2_0730_CGC10
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0730
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0730_31 | HRGMv2_0730_31_2 | 178 | 1113 | - | GT2 |
| pfam | HRGMv2_0730_31 | HRGMv2_0730_31_3 | 1122 | 2018 | - | NTP_transferase | NTP_transf_3 |
| CAZyme | HRGMv2_0730_31 | HRGMv2_0730_31_4 | 2041 | 2793 | - | GT32 |
| NULL(UNKNOWN) | HRGMv2_0730_31 | HRGMv2_0730_31_5 | 2783 | 4087 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0730_31 | HRGMv2_0730_31_6 | 4089 | 5117 | - | GT4 |
| pfam | HRGMv2_0730_31 | HRGMv2_0730_31_7 | 5130 | 6107 | - | PMI_typeI_cat | MPI_cupin_dom |
| pfam | HRGMv2_0730_31 | HRGMv2_0730_31_8 | 6132 | 7439 | - | NTP_transferase | MannoseP_isomer | Cupin_2 |
| CAZyme | HRGMv2_0730_31 | HRGMv2_0730_31_9 | 7441 | 8583 | - | GT4 |
| TC | HRGMv2_0730_31 | HRGMv2_0730_31_10 | 8597 | 9574 | - | 9.B.18.1.2 |
| TC | HRGMv2_0730_31 | HRGMv2_0730_31_11 | 10011 | 11750 | + | 3.A.1.135.7 |
| TC | HRGMv2_0730_31 | HRGMv2_0730_31_12 | 11747 | 13555 | + | 3.A.1.135.9 |
Gene ID: HRGMv2_0730_31_2
Type: CAZyme
Location: 178 - 1113 (-)
Type: CAZyme
Location: 178 - 1113 (-)
Gene ID: HRGMv2_0730_31_3
Type: pfam
Location: 1122 - 2018 (-)
Type: pfam
Location: 1122 - 2018 (-)
Gene ID: HRGMv2_0730_31_4
Type: CAZyme
Location: 2041 - 2793 (-)
Type: CAZyme
Location: 2041 - 2793 (-)
Gene ID: HRGMv2_0730_31_5
Type:
Location: 2783 - 4087 (-)
Type:
Location: 2783 - 4087 (-)
Gene ID: HRGMv2_0730_31_6
Type: CAZyme
Location: 4089 - 5117 (-)
Type: CAZyme
Location: 4089 - 5117 (-)
Gene ID: HRGMv2_0730_31_7
Type: pfam
Location: 5130 - 6107 (-)
Type: pfam
Location: 5130 - 6107 (-)
Gene ID: HRGMv2_0730_31_8
Type: pfam
Location: 6132 - 7439 (-)
Type: pfam
Location: 6132 - 7439 (-)
Gene ID: HRGMv2_0730_31_9
Type: CAZyme
Location: 7441 - 8583 (-)
Type: CAZyme
Location: 7441 - 8583 (-)
Gene ID: HRGMv2_0730_31_10
Type: TC
Location: 8597 - 9574 (-)
Type: TC
Location: 8597 - 9574 (-)
Gene ID: HRGMv2_0730_31_11
Type: TC
Location: 10011 - 11750 (+)
Type: TC
Location: 10011 - 11750 (+)
Gene ID: HRGMv2_0730_31_12
Type: TC
Location: 11747 - 13555 (+)
Type: TC
Location: 11747 - 13555 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium gallicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.