Cluster: HRGMv2_0706_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0706
- CGC Family ID: CGCFAM_00233
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0706_6 | HRGMv2_0706_6_88 | 75067 | 76257 | - | 2.A.45.2.6 |
| TF | HRGMv2_0706_6 | HRGMv2_0706_6_89 | 76478 | 77194 | + | LytTR |
| pfam | HRGMv2_0706_6 | HRGMv2_0706_6_90 | 77191 | 78582 | + | HATPase_c_5 |
| CAZyme | HRGMv2_0706_6 | HRGMv2_0706_6_91 | 78766 | 79533 | + | GH16_21 |
| CAZyme | HRGMv2_0706_6 | HRGMv2_0706_6_92 | 79657 | 82047 | + | GH16_21 |
| CAZyme | HRGMv2_0706_6 | HRGMv2_0706_6_93 | 82140 | 85235 | + | GH3 |
Gene ID: HRGMv2_0706_6_88
Type: TC
Location: 75067 - 76257 (-)
Type: TC
Location: 75067 - 76257 (-)
Gene ID: HRGMv2_0706_6_89
Type: TF
Location: 76478 - 77194 (+)
Type: TF
Location: 76478 - 77194 (+)
Gene ID: HRGMv2_0706_6_90
Type: pfam
Location: 77191 - 78582 (+)
Type: pfam
Location: 77191 - 78582 (+)
Gene ID: HRGMv2_0706_6_91
Type: CAZyme
Location: 78766 - 79533 (+)
Type: CAZyme
Location: 78766 - 79533 (+)
Gene ID: HRGMv2_0706_6_92
Type: CAZyme
Location: 79657 - 82047 (+)
Type: CAZyme
Location: 79657 - 82047 (+)
Gene ID: HRGMv2_0706_6_93
Type: CAZyme
Location: 82140 - 85235 (+)
Type: CAZyme
Location: 82140 - 85235 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Coproplasma
Species
Coproplasma stercorigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.