Cluster: HRGMv2_0706_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0706
- CGC Family ID: CGCFAM_00245
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0706_2 | HRGMv2_0706_2_108 | 140445 | 141398 | + | 3.A.1.34.1 |
| TC | HRGMv2_0706_2 | HRGMv2_0706_2_109 | 141391 | 142194 | + | 3.A.1.34.1 |
| pfam | HRGMv2_0706_2 | HRGMv2_0706_2_110 | 142260 | 143441 | - | LRR_5 | LRR_5 |
| peptidase | HRGMv2_0706_2 | HRGMv2_0706_2_111 | 143679 | 145079 | + | M18.UPW |
| CAZyme | HRGMv2_0706_2 | HRGMv2_0706_2_112 | 145420 | 146445 | + | GT2 |
Gene ID: HRGMv2_0706_2_108
Type: TC
Location: 140445 - 141398 (+)
Type: TC
Location: 140445 - 141398 (+)
Gene ID: HRGMv2_0706_2_109
Type: TC
Location: 141391 - 142194 (+)
Type: TC
Location: 141391 - 142194 (+)
Gene ID: HRGMv2_0706_2_110
Type: pfam
Location: 142260 - 143441 (-)
Type: pfam
Location: 142260 - 143441 (-)
Gene ID: HRGMv2_0706_2_111
Type: peptidase
Location: 143679 - 145079 (+)
Type: peptidase
Location: 143679 - 145079 (+)
Gene ID: HRGMv2_0706_2_112
Type: CAZyme
Location: 145420 - 146445 (+)
Type: CAZyme
Location: 145420 - 146445 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Coproplasma
Species
Coproplasma stercorigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.