Cluster: HRGMv2_0653_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0653
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0653_35 | HRGMv2_0653_35_44 | 41326 | 43530 | - | 1.B.14.1.25 |
| pfam | HRGMv2_0653_35 | HRGMv2_0653_35_45 | 43866 | 46673 | - | tRNA-synt_1 | tRNA-synt_1f | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | tRNA-synt_1_2 |
| pfam | HRGMv2_0653_35 | HRGMv2_0653_35_46 | 46828 | 47784 | + | FAA_hydrolase |
| CAZyme | HRGMv2_0653_35 | HRGMv2_0653_35_47 | 47774 | 49042 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_0653_35 | HRGMv2_0653_35_48 | 49067 | 51367 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0653_35 | HRGMv2_0653_35_49 | 51454 | 52329 | - | MreC |
| TC | HRGMv2_0653_35 | HRGMv2_0653_35_50 | 52338 | 53372 | - | 1.A.33.1.5 |
Gene ID: HRGMv2_0653_35_44
Type: TC
Location: 41326 - 43530 (-)
Type: TC
Location: 41326 - 43530 (-)
Gene ID: HRGMv2_0653_35_45
Type: pfam
Location: 43866 - 46673 (-)
Type: pfam
Location: 43866 - 46673 (-)
Gene ID: HRGMv2_0653_35_46
Type: pfam
Location: 46828 - 47784 (+)
Type: pfam
Location: 46828 - 47784 (+)
Gene ID: HRGMv2_0653_35_47
Type: CAZyme
Location: 47774 - 49042 (-)
Type: CAZyme
Location: 47774 - 49042 (-)
Gene ID: HRGMv2_0653_35_48
Type:
Location: 49067 - 51367 (-)
Type:
Location: 49067 - 51367 (-)
Gene ID: HRGMv2_0653_35_49
Type: pfam
Location: 51454 - 52329 (-)
Type: pfam
Location: 51454 - 52329 (-)
Gene ID: HRGMv2_0653_35_50
Type: TC
Location: 52338 - 53372 (-)
Type: TC
Location: 52338 - 53372 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_C
Species
Helicobacter_C cinaedi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.