Cluster: HRGMv2_0611_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0611
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0611_16 | HRGMv2_0611_16_37 | 43677 | 45470 | + | 2.A.37.1.5 |
| STP | HRGMv2_0611_16 | HRGMv2_0611_16_38 | 45682 | 46359 | + | DeoRC |
| CAZyme | HRGMv2_0611_16 | HRGMv2_0611_16_39 | 46490 | 48151 | + | GH23 |
| pfam | HRGMv2_0611_16 | HRGMv2_0611_16_40 | 48335 | 49138 | + | adh_short | adh_short_C2 |
| TC | HRGMv2_0611_16 | HRGMv2_0611_16_41 | 49409 | 50806 | + | 1.I.1.1.3 |
Gene ID: HRGMv2_0611_16_37
Type: TC
Location: 43677 - 45470 (+)
Type: TC
Location: 43677 - 45470 (+)
Gene ID: HRGMv2_0611_16_38
Type: STP
Location: 45682 - 46359 (+)
Type: STP
Location: 45682 - 46359 (+)
Gene ID: HRGMv2_0611_16_39
Type: CAZyme
Location: 46490 - 48151 (+)
Type: CAZyme
Location: 46490 - 48151 (+)
Gene ID: HRGMv2_0611_16_40
Type: pfam
Location: 48335 - 49138 (+)
Type: pfam
Location: 48335 - 49138 (+)
Gene ID: HRGMv2_0611_16_41
Type: TC
Location: 49409 - 50806 (+)
Type: TC
Location: 49409 - 50806 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter formigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.