Cluster: HRGMv2_0587_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0587
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0587_1 | HRGMv2_0587_1_186 | 211623 | 212366 | - | 3.A.1.103.5 |
| TC | HRGMv2_0587_1 | HRGMv2_0587_1_187 | 212372 | 213169 | - | 3.A.1.104.2 |
| NULL(UNKNOWN) | HRGMv2_0587_1 | HRGMv2_0587_1_188 | 213402 | 213563 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | HRGMv2_0587_1 | HRGMv2_0587_1_189 | 213658 | 215058 | - | S1_2 |
| CAZyme | HRGMv2_0587_1 | HRGMv2_0587_1_190 | 216283 | 217425 | + | GT4 |
| CAZyme | HRGMv2_0587_1 | HRGMv2_0587_1_191 | 217425 | 218243 | + | GT111 | GT111 |
| CAZyme | HRGMv2_0587_1 | HRGMv2_0587_1_192 | 218962 | 220680 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0587_1 | HRGMv2_0587_1_193 | 220680 | 221747 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0587_1 | HRGMv2_0587_1_194 | 221756 | 222718 | - | GT8 |
| pfam | HRGMv2_0587_1 | HRGMv2_0587_1_195 | 222715 | 224511 | - | CofD |
| pfam | HRGMv2_0587_1 | HRGMv2_0587_1_196 | 224508 | 225281 | - | NTP_transf_3 |
| CAZyme | HRGMv2_0587_1 | HRGMv2_0587_1_197 | 225278 | 226339 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0587_1 | HRGMv2_0587_1_198 | 227191 | 227295 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0587_1 | HRGMv2_0587_1_199 | 227820 | 228929 | - | GT2 |
Gene ID: HRGMv2_0587_1_186
Type: TC
Location: 211623 - 212366 (-)
Type: TC
Location: 211623 - 212366 (-)
Gene ID: HRGMv2_0587_1_187
Type: TC
Location: 212372 - 213169 (-)
Type: TC
Location: 212372 - 213169 (-)
Gene ID: HRGMv2_0587_1_188
Type:
Location: 213402 - 213563 (-)
Type:
Location: 213402 - 213563 (-)
Gene ID: HRGMv2_0587_1_189
Type: sulfatase
Location: 213658 - 215058 (-)
Type: sulfatase
Location: 213658 - 215058 (-)
Gene ID: HRGMv2_0587_1_190
Type: CAZyme
Location: 216283 - 217425 (+)
Type: CAZyme
Location: 216283 - 217425 (+)
Gene ID: HRGMv2_0587_1_191
Type: CAZyme
Location: 217425 - 218243 (+)
Type: CAZyme
Location: 217425 - 218243 (+)
Gene ID: HRGMv2_0587_1_192
Type: CAZyme
Location: 218962 - 220680 (-)
Type: CAZyme
Location: 218962 - 220680 (-)
Gene ID: HRGMv2_0587_1_193
Type:
Location: 220680 - 221747 (-)
Type:
Location: 220680 - 221747 (-)
Gene ID: HRGMv2_0587_1_194
Type: CAZyme
Location: 221756 - 222718 (-)
Type: CAZyme
Location: 221756 - 222718 (-)
Gene ID: HRGMv2_0587_1_195
Type: pfam
Location: 222715 - 224511 (-)
Type: pfam
Location: 222715 - 224511 (-)
Gene ID: HRGMv2_0587_1_196
Type: pfam
Location: 224508 - 225281 (-)
Type: pfam
Location: 224508 - 225281 (-)
Gene ID: HRGMv2_0587_1_197
Type: CAZyme
Location: 225278 - 226339 (-)
Type: CAZyme
Location: 225278 - 226339 (-)
Gene ID: HRGMv2_0587_1_198
Type:
Location: 227191 - 227295 (-)
Type:
Location: 227191 - 227295 (-)
Gene ID: HRGMv2_0587_1_199
Type: CAZyme
Location: 227820 - 228929 (-)
Type: CAZyme
Location: 227820 - 228929 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Aphodousia
Species
Aphodousia sp900553105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.